Bio::A...::mase(3pm)

💖 Bio::AlignIO::mase — mase sequence input/output stream 💖

okay bestie, so this is Bio::AlignIO::mase(3pm) — a Perl module from the User Contributed Perl Documentation crew, and she's here to handle mase format alignments. let's get into it 🦋

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✨ NAME ✨

Bio::AlignIO::mase — the mase sequence input/output stream. that's it, that's the whole name, and she ate 💅

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🌸 SYNOPSIS 🌸

do not use this module directly, bestie. i'm so serious. 🫶

you use it through the Bio::AlignIO class instead:

Do not use this module directly.  Use it via the Bio::AlignIO class.

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🎀 DESCRIPTION 🎀

this object can transform Bio::Align::AlignI objects to and from mase flat file databases. so like, alignment objects in, mase files out, and vice versa. iconic behaviour honestly ✨

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💌 FEEDBACK 💌

🫂 Support

please direct your usage questions and support issues to the mailing list:

bioperl-l@bioperl.org

not to the module maintainer directly, okay? 😭 there are so many experienced and responsive experts on that list who can look at your problem and address it quickly. and please include a thorough description of the problem with code and data examples if at all possible — the more detail the better, fr fr. 🍓

🐛 Reporting Bugs

report bugs to the Bioperl bug tracking system so they can keep track of the bugs and their resolution. bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

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👑 AUTHORS — Peter Schattner 👑

email: schattner@alum.mit.edu

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📖 APPENDIX 📖

the rest of the documentation details each of the object methods. internal methods are usually preceded with a _ (iykyk, that underscore is the secret handshake 🔥).

🌟 next_aln

Title   : next_aln
Usage   : $aln = $stream->next_aln()
Function: returns the next alignment in the stream.
Returns : L<Bio::Align::AlignI> object
Args    : NONE

no args, just vibes. she hands you back a Bio::Align::AlignI object, the next alignment in the stream. main character energy 🌈

💫 write_aln

Title   : write_aln
Usage   : $stream->write_aln(@aln)
Function: writes the $aln object into the stream in mase format  ###Not yet implemented!###
Returns : 1 for success and 0 for error
Args    : L<Bio::Align::AlignI> object

⚠️ heads up bestie: the function description literally says ###Not yet implemented!### — so do not count on this one actually writing anything yet. 😭 it returns 1 for success and 0 for error, and it takes a Bio::Align::AlignI object as its arg.

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and that's the whole page, no cap 💖 this was written by perl v5.32.1, dated 2021-08-15, and it's part of the User Contributed Perl Documentation — go forth and align, queen 👑🦋✨