Algori...:Global(3pm)

💖 Algorithm::HMM::Hit::Global(3pm) 💖

okay bestie, welcome to the manual page for Algorithm::HMM::Hit::Global — yeah the name is a whole mouthful, we know, but stay with me because this one is actually so cute and simple 🫶

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✨ NAME ✨

Algorithm::HMM::Hit::Global — the object that holds all the tea about a Hidden Markov Model global hit. that's it. that's the whole job. iconic. 👑

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🌸 DESCRIPTION 🌸

so the Algorithm::HMM::Hit::Global object is literally just a little container that encapsulates information about a global hit in the Hidden Markov Model. think of it as the group chat where the hit's stats live. 💅

now here's the part you actually need to know, because it's giving very important distinction energy:

• domain hits are matches against smaller subsequences in the model. like, a little piece of the vibe.
• global hits — which is what this object is about — mean a match against the entire model. the whole thing. head to toe. no crumbs left. periodt. 🔥

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✨ METHODS ✨

okay here's the menu, and ngl it's short and sweet:

• $dhit->pvalue() — hands you the pvalue for the hit ✨
• $dhit->evalue() — hands you the evalue for the hit ✨
• $dhit->score() — hands you the score for the hit ✨

Returns the pvalue, evalue and score values respectively for the hit. like, that's the whole thing. three little getters, each one doing exactly what it says on the tin. no cap. 🎀

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💜 AUTHOR 💜

the Algorithm::HMM package was originally written by Cory Spencer <cspencer@sfu.ca> of the Simon Fraser University Brinkman Laboratory 🧚 and it's currently maintained by Matthew Laird <matt@brinkman.mbb.sfu.ca>. give them their flowers, they earned them 🌸👑

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🌈 SEE ALSO 🌈

go read these next, bestie, they're the rest of the cinematic universe:

• Algorithm::HMM
• Algorithm::HMM::Hit::Domain
• Algorithm::HMM::Report

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💀 real talk though: nothing here is dangerous, deprecated or undefined — it's just getters. you're safe. go wild. 🦋

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and that's the whole page!! this one's perl v5.34.0, dated 2022-02-06, filed under the very dramatic-sounding name Algori...:Global(3pm) 💖 bye bestie, go slay your HMM analysis ✨🎀🫶