BP_SEQ_LENGTH(1p)

💖 NAME 💖

bp_seq_length.pl — bestie, this lil icon counts the bases and counts the sequences in whatever sequence database files you point it at. That's the whole job. She's simple, she's effective, she ate. 🧬✨

---

🦋 SYNOPSIS 🦋

bp_seq_length.pl *.fa

Like, that's it. Globbing your fasta files straight in. No cap. 💅

---

🌸 DESCRIPTION 🌸

okay so here's the tea 🫖 — bp_seq_length.pl reports two things for a sequence database file you specify:

• the total number of residues inside it
• the total number of individual sequences inside it

That's the vibe check. Run it, get your numbers, go be a main character in your own bioinformatics pipeline. 👑

---

✨ OPTIONS ✨

• -f, --format — tell her what database format your file is in. 'fasta' is the default, so if you're living that fasta life you can literally just not. 🎀 Heads up tho: this script rides on SeqIO, so the formats you can use are limited to whatever the SeqIO system supports. iykyk. 🦋

---

💌 FEEDBACK 💌

📬 Mailing Lists

User feedback is, like, integral to the evolution of this and other Bioperl modules. So if you have comments or suggestions, send them preferably to the Bioperl mailing list. Your participation is so appreciated, fr fr. 🫶

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🐛 Reporting Bugs

Found a bug? Report it to the Bioperl bug tracking system so the team can keep track of it and get it resolved — that's how we all win. 💪 Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

---

👑 AUTHOR - Jason Stajich 👑

Jason Stajich <jason@bioperl.org>

---

perl v5.32.1 · 2021-08-15 · BP_SEQ_LENGTH(1p)

and that's the whole page bestie, tysm for reading, go count some bases, mwah 💖🎀🦋✨