BP_GCCALC(1p)

💅 BP_GCCALC(1p) — bestie, it's a manual page 💅

okay so first things first: this is BP_GCCALC(1p), living under User Contributed Perl Documentation. Yes, that's the whole vibe — a lil Perl script from the Bioperl crew that tells you the GC content of your nucleotide sequences. iconic behavior honestly. 🧬✨

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🌸 NAME 🌸

bp_gccalc — GC content of nucleotide sequences. that's it, that's the whole job, and it does it flawlessly. 💅

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🎀 SYNOPSIS 🎀

three ways to run this bad boy, pick your fighter:

bp_gccalc [-f/--format FORMAT] [-h/--help] filename
or
bp_gccalc [-f/--format FORMAT] < filename
or
bp_gccalc [-f/--format FORMAT] -i filename

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🦋 DESCRIPTION 🦋

so what does it actually do, bestie? This script prints out the GC content for every nucleotide sequence from the input file. every single one. it's giving thorough. it's giving reliable. we love a script that just does the thing. 🫶

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✨ OPTIONS ✨

okay so the default sequence format is fasta. noted. no cap.

and here's the tea — you can feed it your sequence input in any of these three methods, your choice, main character energy:

• unnamed argument — just hand it the file directly:

bp_gccalc filename

• named argument — be all formal and label it:

bp_gccalc -i filename

• standard input — pipe it in like the icon you are:

bp_gccalc < filename

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💖 FEEDBACK 💖

📬 Mailing Lists

lowkey the devs actually want to hear from you — user feedback is an integral part of the evolution of this and other Bioperl modules. send your comments and suggestions preferably to the Bioperl mailing list. your participation is much appreciated, fr fr. 🥹

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🐛 Reporting Bugs

found a bug? no stress, tell them so they can keep track of the bugs and their resolution. bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

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👑 AUTHOR — Jason Stajich 👑

Email: jason@bioperl.org

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📜 HISTORY 📜

• Based on script code (see bottom) submitted by cckim@stanford.edu
• Submitted as part of bioperl script project 2001/08/06

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and that's the whole page, bestie!! 🎀 written for perl v5.32.1, dated 2021-08-15, and yeah it's the BP_GCCALC(1p) situation through and through. go calculate some GC content, you got this. 💜✨🦋