BP_AACOMP(1p)

💖 BP_AACOMP 💖

okay so bestie, this is bp_aacomp — the amino acid composition of protein sequences. yes, THAT one. come get your protein counts, she's serving. 🧬✨

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🌸 NAME 🌸

bp_aacomp — amino acid composition of protein sequences 💅

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✨ SYNOPSIS ✨

bp_aacomp [-f/--format FORMAT] [-h/--help] filename
or
bp_aacomp [-f/--format FORMAT] < filename
or
bp_aacomp [-f/--format FORMAT] -i filename

three ways to feed her, pick your fighter 💜

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🦋 DESCRIPTION 🦋

okay so what this script DOES is it prints out the count of amino acids over all protein sequences from the input file. that's it. that's the whole vibe. every sequence, every amino acid, tallied up. no cap. 🎀

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👑 OPTIONS 👑

lowkey the important thing first: the default sequence format is fasta. so if you don't say anything, she's assuming fasta, periodt.

The sequence input can be provided using any of the three methods:

• unnamed argument — just hand her the file directly:

bp_aacomp filename

• named argument — spell it out with the flag:

bp_aacomp -i filename

• standard input — pipe it in like the main character you are:

bp_aacomp < filename

and the flags floating around up in the synopsis: -f, --format take a FORMAT value, and -h, --help do the help thing. 🫶

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💌 FEEDBACK 💌

💬 Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. (fr fr, they want to hear from you, it's giving community 🥹)

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

bestie if you found a bug, please actually report it, don't just suffer in silence 😭 they literally track them there.

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🌈 AUTHOR - Jason Stajich 🌈

Email jason@bioperl.org — shoutout to Jason, iconic behavior 💖

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📜 HISTORY 📜

Based on aacomp.c from an old version of EMBOSS ✨

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and that's the whole page babes, no notes. this one's from the perl v5.32.1 era, dated 2021-08-15, and it's the BP_AACOMP(1p) manual page 🎀💅 slay, go count some amino acids 🦋