AVERAG...ME_SIZE(1p)

✨ average_genome_size(1p) ✨

okay bestie, sit down, we're doing a perl manpage 💅 this one lives in the User Contributed Perl Documentation section and it's about a lil script called average_genome_size 🧬✨

---

🌸 NAME 🌸

average_genome_size — calculate the average genome size (in bp) of species in a Grinder library 🦋

---

💖 DESCRIPTION 💖

so basically, this bad boy calculates the average genome size (in bp) of species in a Grinder library 📏🧬

how? you give it the library composition and the full-genomes used to produce it, and it does the math. that's it, that's the whole vibe. slay 💅

---

🎀 REQUIRED ARGUMENTS 🎀

these are required, bestie. no arguments, no answers. periodt 🫶

• <db_fasta> — a FASTA file containing the full-genomes used to produce the Grinder library. this is the whole genome data, the raw material, the main character energy 🔥
• <rank_file> — the Grinder rank file that describes the library composition. iykyk, it tells the script who's in the library and how much of them there is 🌈

---

👑 COPYRIGHT 👑

Copyright 2009-2012 Florent ANGLY <florent.angly@gmail.com> 💌

Grinder is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License (GPL) as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. ✨

Grinder is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 😭 (yes that's the legal all-caps screaming, we keep it, it means something)

See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with Grinder. If not, see <http://www.gnu.org/licenses/>. 🎀

---

💀 BUGS 💀

ngl, all complex software has bugs lurking in it, and this program is no exception 🙈

If you find a bug, please report it on the SourceForge Tracker for Grinder: <http://sourceforge.net/tracker/?group_id=244196&atid=1124737>

Bug reports, suggestions and patches are welcome 🫶 Grinder's code is developed on Sourceforge (<http://sourceforge.net/scm/?type=git&group_id=244196>) and is under Git revision control. To get started with a patch, do:

git clone git://biogrinder.git.sourceforge.net/gitroot/biogrinder/biogrinder

go off, submit that patch, be the change you want to see in the repo 💅

---

reminder bestie: every detail above is load-bearing — the args, the email, the license, the tracker link, the clone URL. do not freestyle with any of it 💖

okay that's the whole page! this was rendered with perl v5.32.0, dated 2020-12-03, from the User Contributed Perl Documentation set. bye bestie, go average some genomes 🧬✨🦋