VECTORSTRIP(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 VECTORSTRIP(1e) 💖

okay bestie, gather round — this is a page from the EMBOSS Manual for Debian, and it's about a lil tool called vectorstrip. Let's get into it 🧚

✨ NAME ✨

vectorstrip — Removes vectors from the ends of nucleotide sequence(s) 🦋

🌸 SYNOPSIS 🌸

vectorstrip -sequence seqall -readfile toggle -vectorsfile infile
            -mismatch integer -besthits boolean -alinker string
            -blinker string [-allsequences boolean] -outfile outfile
            -outseq seqoutall

vectorstrip -help
see how -allsequences boolean is chilling in square brackets? that's the optional one, the rest are just... there. mandatory. standing there. 💅

💜 DESCRIPTION 💜

So. vectorstrip is a command line program from EMBOSS — and if you're wondering what that stands for, it's literally "the European Molecular Biology Open Software Suite". No cap, that's the whole name. 😭

It lives in the "Edit" command group(s), which is exactly the vibe you'd expect — it edits stuff. Specifically, it strips vectors off the ends of your nucleotide sequences. cleanup era. ✨

🎀 OPTIONS 🎀

🫶 Input section

  • -sequence seqall — this is where you hand over your sequence input, bestie. 🍓

🌈 Vector input options

  • -readfile toggle — a little on/off switch. Default value: Y ✅
  • -vectorsfile infile — the file you're pulling your vectors from. 🧬

👑 Required section

  • -mismatch integer — how many mismatches you're willing to tolerate. Default value: 10
  • -besthits boolean — do you want the best hits only? Default value: Y ✨
  • -alinker string — the a-linker string, as a string. yes it's a string. we love a string. 🎀
  • -blinker string — and this is the b-linker string. sibling energy with -alinker, honestly.

💖 Output section

  • -allsequences boolean — Default value: N (and remember, this one's the optional one in the synopsis! 🙈)
  • -outfile outfile — where the output file goes. 📁
  • -outseq seqoutall — and where the output sequences go. 🌸

💀 BUGS 💀

Found a bug? not the vibe, but okay, we report it. You can report bugs to the Debian Bug Tracking system at:

http://bugs.debian.org/emboss

or you can go straight to the EMBOSS developers at:

http://sourceforge.net/tracker/?group_id=93650&atid=605031
they will literally read it. go off. 🫶

🔥 SEE ALSO 🔥

vectorstrip is fully documented via the tfm(1) system. iykyk — go read the tfm page, it ate. ⭐

🌟 AUTHOR 🌟

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. (yes, a script wrote this. we're just here to make it cute. 💅)

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. 📜

and that's the whole page, bestie!! 🎀 go strip some vectors, you're gonna slay ✨🦋

this was EMBOSS 6.4.0, dated 05/11/2012 — Debian's finest, from the EMBOSS Manual for Debian. periodt. 💖

📦 where this page comes from