STRETCHER(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 STRETCHER(1e) 💖

okay so bestie, welcome to the EMBOSS Manual for Debian ✨ this is the glow-up edition of the stretcher page and I am so excited to walk you through it. buckle up 🎀

✨ NAME ✨

stretcher — Needleman-Wunsch rapid global alignment of two sequences 🧬🦋

🌸 SYNOPSIS 🌸

stretcher -asequence sequence -bsequence sequence [-datafile matrix]
          [-gapopen integer] [-gapextend integer] -outfile align

stretcher -help

💅 DESCRIPTION 💅

stretcher is a command line program from EMBOSS — that's “the European Molecular Biology Open Software Suite” 💜 — and it's living its best life as part of the "Alignment:Global" command group(s). periodt.

🔥 OPTIONS 🔥

🫶 Input section 🫶

  • -asequence sequence — your first sequence, the A-side, the main character. 💖
  • -bsequence sequence — your second sequence, the B-side, the love interest. 💖
  • -datafile matrix — this is the scoring matrix file used when comparing sequences. by default it's the file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). these files are found in the 'data' directory of the EMBOSS installation. no cap. 🗂️✨

🌈 Additional section 🌈

  • -gapopen integer — default value: @($(acdprotein)? 12 : 16) 😌
  • -gapextend integer — default value: @($(acdprotein)? 2 : 4) 😌

👑 Output section 👑

  • -outfile align — where your gorgeous little alignment lands. 💾

😭 BUGS 😭

found a bug? bestie we gotta report it. bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). do it for the girls fr fr 🫶

🧚 SEE ALSO 🧚

stretcher is fully documented via the tfm(1) system. iykyk 💫

⭐ AUTHOR ⭐

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. 🛠️ iconic behavior honestly

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. 📜💖

and that's the whole page, bestie!! you ate that 💅

signing off with love from EMBOSS 6.4.0, dated 05/11/2012, hanging out in manual section 1e 🦋✨ byeeee 🎀

📦 where this page comes from