SHOWORF(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 SHOWORF(1e) 💖

okay bestie, welcome to showorf, a lil command line program from EMBOSS (“the European Molecular Biology Open Software Suite”) and it lives in the Nucleic:Gene finding,Nucleic:Translation command group(s). it's giving "let me show you your nucleotide sequence and its translation, but make it pretty" ✨

🌸 NAME 🌸

showorf — display a nucleotide sequence and translation in pretty format 🎀

🦋 SYNOPSIS 🦋

showorf -sequence sequence -frames list [-table list] -outfile outfile
        [-ruler boolean] [-plabel boolean] [-nlabel boolean]
        -width integer

showorf -help

✨ DESCRIPTION ✨

so showorf is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”) and it is part of the Nucleic:Gene finding,Nucleic:Translation command group(s). that's the whole vibe. it takes your sequence and shows it off with the translation, all dolled up 💅

👑 OPTIONS 👑

💜 Input section

  • -sequence sequence — this is where you hand over the sequence, bestie, no sequence no show 🙈

🧚 Required section

  • -frames list — which frames to display. Default value: 1,2,3,4,5,6. all six frames, the full main character lineup 👑

🍓 Additional section

  • -table list — the translation table. optional, but she's there if you need her 💖

🌈 Output section

  • -outfile outfile — where the pretty output goes, fr fr 📝
  • -ruler boolean — turn the ruler on or off. Default value: Y
  • -plabel boolean — the protein label toggle. Default value: Y
  • -nlabel boolean — the nucleotide label toggle. Default value: Y
  • -width integer — how wide the output is. Default value: 50
lowkey these booleans are all Y by default so the labels and ruler show up unless you say otherwise. -table is the only one with no default listed, so don't @ me 💀

😭 BUGS 😭

found a bug? not the vibe. Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). go tell them, they wanna know 🫶

🔥 SEE ALSO 🔥

showorf is fully documented via the tfm(1) system. iykyk 📚

💅 AUTHOR 💅

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. iconic behaviour, honestly.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. periodt 💖

and that's the whole page, bestie!! this one's EMBOSS 6.4.0, dated 05/11/2012, and it's the SHOWORF(1e) manual — go translate something pretty with it, mwah 💋✨

📦 where this page comes from