SEQWORDS(1e)

💖 SEQWORDS(1e) 💖

okay so bestie, welcome to SEQWORDS, a page from the EMBOSS Manual for Debian. yes we're in the group chat now. pull up a chair 🫶

✨ NAME ✨

seqwords — Generates DHF files from keyword search of UniProt. no cap, that's literally what it does 💅

🌸 SYNOPSIS 🌸

seqwords -keyfile infile -spfile infile -outfile outfile

seqwords -help

🦋 DESCRIPTION 🦋

seqwords is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). it's out here living its best life as part of the "Protein:3D Structure" command group(s). iconic behaviour honestly 👑

🎀 OPTIONS 🎀

💜 Input section

• -keyfile infile — this one names the keywords file (input). it's giving "list of keywords", specifically a list of keywords specific to a number of SCOP or CATH families and superfamilies used by SEQWORDS to search a sequence database. so yeah, SEQWORDS takes this list and goes hunting 🔍
• -spfile infile — this one names the sequence database (input) to search. that's the thing we're searching through, bestie.

💖 Output section

• -outfile outfile — this one names the DHF file (domain hits file) (output). and in case you're wondering what a 'domain hits file' even is: it contains database hits (sequences) with domain classification information, in the DHF format (FASTA-like). the hits are relatives to a SCOP or CATH family (or other node in the structural hierarchies) and are found from a search of a sequence database. FYI, files containing hits retrieved by PSIBLAST are generated by using SEQSEARCH, hits retrieved by a sparse protein signatare by using SIGSCAN or various types of HMM and profile by using LIBSCAN. and the default value? test.hits ✨

😭 BUGS 😭

found a bug? not the vibe, but okay. bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). go tell them, they wanna know 💌

🌈 SEE ALSO 🌈

seqwords is fully documented via the tfm(1) system. iykyk 📖

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

• Wrote the script used to autogenerate this manual page. slay, honestly.

⭐ COPYRIGHT ⭐

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. periodt. 💅

and that's the whole page, bestie!! 🎀 this little manual came from DOMSEARCH 0.1.0++20100721, dated 08/11/2010, and it's the SEQWORDS(1e) page — go forth and search those keywords, you got this 🦋✨💖