SEQMATCHALL(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 SEQMATCHALL(1e) 💖

okay so bestie, welcome to seqmatchall — she's a lil command line program from EMBOSS, aka the European Molecular Biology Open Software Suite, and she lives in the "Alignment:Local" command group(s). her whole thing? all-against-all word comparison of a sequence set. like, every sequence gets compared to every other sequence. no cap. 💅

✨ SYNOPSIS ✨

seqmatchall -sequence seqset -wordsize integer -outfile align

seqmatchall -help

that's it. that's the whole vibe. 🦋

🌸 DESCRIPTION 🌸

so seqmatchall is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite", pls respect the full government name 💜). she belongs to the "Alignment:Local" command group(s), which is basically her lil friend group in the EMBOSS ecosystem.

what does she do? all-against-all word comparison of a sequence set. iconic behaviour honestly. 🎀

🧚 OPTIONS 🧚

🫶 Input section

  • -sequence seqset — this is the sequence set you're feeding her. your input besties. 🍓

👑 Required section

  • -wordsize integer — the word size, obviously. and ngl, the default value is 4. don't forget it, she needs it. ✨

🌈 Output section

  • -outfile align — where the alignment goes. your output file, your moment. 💖

💀 BUGS 💀

found a bug? not me manifesting that 🙈 but if it happens, you can report it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or you can go straight to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031. they'll handle it fr fr. 🫶

👀 SEE ALSO 👀

seqmatchall is fully documented via the tfm(1) system. iykyk. 📚✨

💜 AUTHOR 💜

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • they wrote the script used to autogenerate this manual page. real ones. 🫡

this manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. it can be redistributed under the same terms as EMBOSS itself. so go forth and share responsibly, bestie. 💖

and that's the whole page!! this was autogenerated for EMBOSS 6.4.0 and dated 05/11/2012, from your girl SEQMATCHALL(1e) — mwah, love u, go compare some sequences 💅✨🦋

📦 where this page comes from