RESTOVER(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 RESTOVER — the manual page bestie 💖

okay so this is restover(1e), from the EMBOSS Manual for Debian. pull up a chair, grab a boba, we're doing this 🧋✨

🌸 NAME 🌸

restover — find restriction enzymes producing a specific overhang

like. it goes looking for the enzymes that give you exactly the overhang you asked for. no cap. 🔥

✨ SYNOPSIS ✨

restover -sequence seqall -datafile datafile -mfile datafile
         -seqcomp string -min integer -max integer -single boolean
         -threeprime boolean -blunt boolean -sticky boolean
         -ambiguity boolean -plasmid boolean -methylation boolean
         -commercial boolean -html boolean -limit boolean
         -alphabetic boolean -fragments boolean -outfile outfile

restover -help

🦋 DESCRIPTION 🦋

restover is a command line program from EMBOSS, aka “the European Molecular Biology Open Software Suite”. iconic name, honestly. 👑

it lives in the "Nucleic:Restriction" command group(s). that's its little friend group. 💅

🎀 OPTIONS 🎀

💜 Input section

  • -sequence seqall — the sequence(s) you're feeding in, bestie. 🍓
  • -datafile datafile — the data file it reads from.
  • -mfile datafile — another data file.
    • Default value: Emethylsites.dat

🫶 Required section

  • -seqcomp string — required, fr fr. you can't skip this one, it's not optional, it's required. 😭

🔥 Advanced section

  • -min integer
    • Default value: 1
  • -max integer
    • Default value: 2000000000
  • -single boolean
    • Default value: N
  • -threeprime boolean
    • Default value: N
  • -blunt boolean
    • Default value: Y
  • -sticky boolean
    • Default value: Y
  • -ambiguity boolean
    • Default value: Y
  • -plasmid boolean
    • Default value: N
  • -methylation boolean — if this is set then RE recognition sites will not match methylated bases. like, methylated bases get ghosted. 👻 Default value: N
  • -commercial boolean
    • Default value: Y

🌈 Output section

  • -html boolean
    • Default value: N
  • -limit boolean
    • Default value: Y
  • -alphabetic boolean
    • Default value: N
  • -fragments boolean
    • Default value: N
  • -outfile outfile — where the output goes. slay. 💖

💀 BUGS 💀

found a bug? not me finding bugs 🙈 you can report them to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). they wanna hear about it, periodt.

👀 SEE ALSO 👀

restover is fully documented via the tfm(1) system. iykyk. 📖✨

🎀 AUTHOR 🎀

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. (yes, a script wrote this. the script ate, ngl. 💅)

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

k so real talk: this page is autogenerated, so don't come for me about the ✨vibes✨ of the original prose. i just made it cute. the facts are all still here, untouched. 🫶

that's the whole thing bestie, hope this was helpful, mwah 💋

— with love, from EMBOSS 6.4.0, dated 05/11/2012, answering to the name RESTOVER(1e) 🌸🦋✨

📦 where this page comes from