RECODER(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ recoder(1e) ✨

okay bestie, welcome to the manual page for recoder — straight out of the EMBOSS Manual for Debian 💖 she's giving main character energy in section 1e and she's here to help you find restriction sites you can remove (mutate) without changing the translation. no cap. 🧬✨

🌸 NAME 🌸

recoder — find restriction sites to remove (mutate) with no translation change 💅

like literally, she hunts down the spots you can quietly edit so your protein stays exactly the same. iconic.

🎀 SYNOPSIS 🎀

recoder -sequence sequence -enzymes string -sshow boolean -tshow boolean
        -outfile report

recoder -help

yes queen, that's the whole shape of her. two ways in: the full run, or just a lil -help 🫶

🦋 DESCRIPTION 🦋

recoder is a command line program from EMBOSS — that's “the European Molecular Biology Open Software Suite”, iykyk 🌈💖

She's part of the "Nucleic:Restriction" command group(s). so if you're hanging out in restriction-land, she's one of the girlies in that clique 💅

✨ OPTIONS ✨

💜 Input section

  • -sequence sequence — your input sequence, bestie. hand it over and she'll do her thing 🧚

💖 Required section

  • -enzymes string — which enzymes you care about. Default value: all ✨ (yes, "all" means ALL, she is not subtle)

🌸 Output section

  • -sshow boolean — a boolean, default value: N. 🎀
  • -tshow boolean — another boolean, default value: N. 🎀
  • -outfile report — where the report goes. 📝 your lil report file, slay.

💀 BUGS 💀

found a bug? not the vibe. 😭 report it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or slide directly into the EMBOSS developers' DMs at http://sourceforge.net/tracker/?group_id=93650&atid=605031 🫶 they wanna know, fr fr.

👀 SEE ALSO 👀

recoder is fully documented via the tfm(1) system. go read her sister page, bestie, she's got the lore 📚✨

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. (the lil automation girly 🎀)

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. so like, same energy, same rules, periodt. 🫶

and that's the whole page, bestie!! mwah 💖

EMBOSS 6.4.0 · 05/11/2012 — that's the version and the date this page came into the world, and yes she's still serving ✨ no notes. bye babes!! 💅🌈🎀

📦 where this page comes from