PEPWHEEL(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💫 PEPWHEEL(1e) 💫

okay bestie, so this is pepwheel, straight out of the EMBOSS Manual for Debian (like, manual section 1e, the fancy bioinformatics corner of the man page universe 🧬). It draws helical wheel diagrams for protein sequences and honestly? it's giving structural biology realness. ✨

🌸 NAME 🌸

pepwheel — draw a helical wheel diagram for a protein sequence 💖

🎀 SYNOPSIS 🎀

pepwheel -sequence sequence -wheel boolean [-steps integer]
         [-turns integer] -graph graph -amphipathic toggle
         -squares string -diamonds string -octags string

pepwheel -help

no cap, that's the whole vibe right there. -sequence, -wheel, -graph, -amphipathic, -squares, -diamonds and -octags are the required main-character flags; -steps and -turns are the optional side quests in brackets. 💅

🦋 DESCRIPTION 🦋

pepwheel is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). fr fr, that's the whole suite — the European Molecular Biology Open Software Suite. 🌈

It lives in the "Display,Protein:2D Structure" command group(s), which is exactly where a helical wheel diagram belongs, periodt. 🫶

✨ OPTIONS ✨

🌸 Input section 🌸

  • -sequence sequence — the protein sequence you're throwing at it, bestie. 🧚

💖 Output section 💖

  • -wheel boolean — Default value: Y. yes girl, we're drawing the wheel. 👑
  • -steps integer — okay so the number of residues plotted per turn is this value divided by the 'turns' value. Default value: 18. math is math. 💅
  • -turns integer — and the number of residues plotted per turn is the 'steps' value divided by this value. Default value: 5. they're literally in a relationship, they divide each other. 😭
  • -graph graph — the graph output goes here. 📈

⭐ Markup section ⭐

  • -amphipathic toggle — if this is true then the residues ACFGILMVWY are marked as squares and all other residues are unmarked. and hear me when I say: this overrides any other markup that you may have specified using the qualifiers '-squares', '-diamonds' and '-octags'. it's not sharing the spotlight. 🙈
  • -squares string — by default the aliphatic residues ILVM are marked with squares. Default value: ILVM. 🟪
  • -diamonds string — by default the residues DENQST are marked with diamonds. Default value: DENQST. 💎
  • -octags string — by default the positively charged residues HKR are marked with octagons. Default value: HKR. 🛑✨

💀 BUGS 💀

found a bug? not the vibe, but okay — report it to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or slide directly into the EMBOSS developers' DMs (http://sourceforge.net/tracker/?group_id=93650&atid=605031). they'll handle it. 🫶

👀 SEE ALSO 👀

pepwheel is fully documented via the tfm(1) system. iykyk, go read tfm(1) if you want the deep lore. 📚

💜 AUTHOR 💜

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. iconic behaviour, honestly. 👑

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

and that's a wrap, bestie 🎀 this page was brought to you by EMBOSS 6.4.0, dated 05/11/2012, living its PEPWHEEL(1e) truth forever. slay, go plot some helices. 💅✨🌸

📦 where this page comes from