PEPSTATS(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 PEPSTATS 💖

okay bestie, welcome to pepstats, a page straight out of the EMBOSS Manual for Debian. this is PEPSTATS(1e) and she is here to do math on your proteins. pull up a chair 🎀

✨ NAME ✨

pepstats — Calculates statistics of protein properties

no cap, that's literally the whole job. she looks at your protein and tells you the numbers. 💅

🌸 SYNOPSIS 🌸

pepstats -sequence seqall -aadata datafile -mwdata datafile
         -termini boolean -mono boolean -outfile outfile

pepstats -help

so that's the full run-down of how you call her. the second one is the "bestie i'm lost" version 🫶

🦋 DESCRIPTION 🦋

okay so pepstats is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). yes, that's the whole name, they went full government name on it.

she belongs to the "Protein:Composition,Protein:Properties" command group(s). that's her little clique. 💜

💅 OPTIONS 💅

🍓 Input section

  • -sequence seqall — your actual protein input, the thing she's gonna crunch the numbers on ✨
  • -aadata datafile — Amino acid properties. Default value: Eamino.dat. that's the little reference file she peeks at for amino acid properties, and yeah she's got a fave already picked out 💖
  • -mwdata datafile — Molecular weight data for amino acids. Default value: Emolwt.dat. this is where she gets the molecular weights from, and again, default already loaded, she's prepared 👑

🌈 Advanced section

  • -termini boolean — Default value: Y. lowkey a yes by default, bestie. ✅
  • -mono boolean — Default value: N. and this one's a no by default, no pressure. 🙈

🎀 Output section

  • -outfile outfile — where the results go. name your file, she'll fill it, periodt 💜

💀 BUGS 💀

found a bug?? not me being the messenger but — bugs can be reported to the Debian Bug Tracking system:

http://bugs.debian.org/emboss

or you can go straight to the EMBOSS developers:

http://sourceforge.net/tracker/?group_id=93650&atid=605031

fr fr, they wanna know. don't just sit there suffering in silence 😭

🔥 SEE ALSO 🔥

pepstats is fully documented via the tfm(1) system. so if you want the deep lore, that's where it lives. iykyk 🧚

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page.

shoutout to the team, they autogenerated this whole thing and we love that for them 💖

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

so like, same energy as EMBOSS, redistribute away, just keep the same terms, okay? 🫶

ok that's the whole page bestie, go compute some protein properties, you're gonna slay 💅✨

and a lil cute sign-off for the record: this was EMBOSS 6.4.0, dated 05/11/2012, and the manual page is PEPSTATS(1e). mwah 💋🌈

📦 where this page comes from