PEPINFO(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 PEPINFO(1e) — the EMBOSS Manual for Debian, but make it cute 💖

okay bestie, gather round, because we're about to talk about pepinfo from the EMBOSS Manual for Debian and honestly? it's giving protein-property-plotting main character energy. 🌸

✨ NAME ✨

pepinfo — plot amino acid properties of a protein sequence in parallel. yes, in parallel, she's multitasking, she's booked and busy. 💅

✨ SYNOPSIS ✨

pepinfo -sequence sequence [-aaproperties datafile]
        [-aahydropathy datafile] [-hwindow integer] -graph xygraph
        -outfile outfile -generalplot boolean -hydropathyplot boolean

pepinfo -help

look at her. two whole ways to run her. the first one is the full glow-up pipeline, the second one is just -help when you're lost (no shame, we've all been there 🫶).

✨ DESCRIPTION ✨

so pepinfo is a command line program from EMBOSS — that's the “European Molecular Biology Open Software Suite”, and yes the acronym ate. 🎀

she's part of the "Protein:Composition,Protein:Properties,Display" command group(s), which is basically her little clique. iconic. no cap. ✨

✨ OPTIONS ✨

🌸 Input section 🌸

  • -sequence sequence — this is the protein sequence you're feeding her. the whole point. the moment. 💖
  • -aaproperties datafile — the amino acid properties datafile she reads from. Default value: Eaa_properties.dat
  • -aahydropathy datafile — the amino acid hydropathy datafile, same vibe, different file. Default value: Eaa_hydropathy.dat

🦋 Additional section 🦋

  • -hwindow integer — the window size, lowkey important, highkey adjustable. Default value: 9

🎀 Output section 🎀

  • -graph xygraph — where the xygraph goes. she's plotting, bestie. 📈
  • -outfile outfile — the file your results land in. your little souvenir. 🫶
  • -generalplot boolean — turn the general plot on or off. Default value: Y
  • -hydropathyplot boolean — turn the hydropathy plot on or off. Default value: Y

💀 BUGS 💀

not me having to tell you she has bugs 😭 but fr fr, if you find one, bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or you can go straight to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

do it, bestie. reporting bugs is a public service and it's lowkey iconic of you. 👑

🌈 SEE ALSO 🌈

pepinfo is fully documented via the tfm(1) system. iykyk. ⭐

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. slay, honestly. 💅

this manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. it can be redistributed under the same terms as EMBOSS itself.

and that's the whole page, bestie!! EMBOSS 6.4.0, dated 05/11/2012, and this gorgeous little manual page is PEPINFO(1e). go plot some amino acids. periodt. 💖✨🎀

📦 where this page comes from