PATMATMOTIFS(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ PATMATMOTIFS(1e) — the patmatmotifs glow-up ✨

okay bestie, this is patmatmotifs(1e) from the EMBOSS manual for Debian, and it's literally the moment your protein sequence gets a whole motif vibe check 💅

🌸 NAME 🌸

patmatmotifs — scan a protein sequence with motifs from the PROSITE database 🧚

🌈 SYNOPSIS 🌈

patmatmotifs -sequence sequence [-full boolean] [-prune boolean]
             -outfile report

patmatmotifs -help

💖 DESCRIPTION 💖

okay so patmatmotifs is a command line program from EMBOSS, aka “the European Molecular Biology Open Software Suite”. she's part of the "Protein:Motifs" command group(s), so like… she runs with a very specific crowd, and that crowd is iconic. no cap. 👑

✨ OPTIONS ✨

🎀 Input section 🎀

  • -sequence sequence — hand her your protein sequence, bestie. that's the whole assignment.

🦋 Additional section 🦋

  • -full boolean — the whole full-scan vibe. default value: N.
  • -prune boolean — ignore simple patterns. and listen, if this one is true then these simple post-translational modification sites do not get reported: myristyl, asn_glycosylation, camp_phospho_site, pkc_phospho_site, ck2_phospho_site, and tyr_phospho_site. default value: Y.
not her pruning away the little guys 😭 but fr fr, that's exactly what Y means here — those six get filtered out of the report unless you change it.

💅 Output section 💅

  • -outfile report — where the report goes. she's giving main character energy, she needs somewhere to shine. ⭐

💀 BUGS 💀

bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). pls be nice, they're doing their best 🫶

🔥 SEE ALSO 🔥

patmatmotifs is fully documented via the tfm(1) system. iykyk ✨

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • wrote the script used to autogenerate this manual page. not me being an autogenerated queen 🙈

this manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. it can be redistributed under the same terms as EMBOSS itself. 🌈

and that's the whole thing, bestie! this was EMBOSS 6.4.0, dated 05/11/2012, and you just read the PATMATMOTIFS(1e) page. go scan something slay. 💖✨🎀

📦 where this page comes from