ONTOTEXT(1e)

🦋 ontotext — get ontology term(s) original full text ✨

okay so bestie, welcome to ontotext(1e) 💖 this is the manual page for it and we're gonna get through it together, no cap.

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🌸 NAME 🌸

ontotext — get ontology term(s) original full text 🎀

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✨ SYNOPSIS ✨

like, here's how you actually call it:

ontotext -oboterms obo [-subclasses boolean] [-obsolete boolean]
         -outfile outfile

ontotext -help

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💅 DESCRIPTION 💅

ontotext is a command line program straight out of EMBOSS, which stands for “the European Molecular Biology Open Software Suite” 🌈 (iconic name, honestly).

It lives in the command group "Ontology,Data retrieval:Ontology data,Data retrieval:Text data" — yes that's the whole group name, it's giving very much "my full legal name" energy 😭

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🫶 OPTIONS 🫶

🌟 Input section 🌟

• -oboterms obo — the ontology terms you're feeding in, bestie 📥

🌟 Additional section 🌟

• -subclasses boolean — turn this on and the query matches get extended to include all the terms that are specialisations (sub-classes) of the matched terms 🧬 like, the whole family tree gets invited. Default value: N
• -obsolete boolean — so the default behaviour is to not use or return obsolete terms 🚫 if you set this option, it'll include all of them. Default value: N

🌟 Advanced section 🌟

okay so this section exists but it's lowkey empty 🙈 nothing in here, we move.

🌟 Output section 🌟

• -outfile outfile — where the results go 📤

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💀 BUGS 💀

Found a bug? not the vibe, but okay, report it 🐛 you can send it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or you can go straight to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031 🫡

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👑 SEE ALSO 👑

ontotext is fully documented via the tfm(1) system 📚 (iykyk)

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🎀 AUTHOR 🎀

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

• they wrote the script used to autogenerate this manual page 🤖

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🌈 COPYRIGHT 🌈

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package ✨ It can be redistributed under the same terms as EMBOSS itself.

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and that's the whole page, bestie, you ate it 💅 this was EMBOSS 6.4.0, dated 05/11/2012, signing off 🦋💖