ONTOISOBSOLETE(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💅 ONTOISOBSOLETE(1e) — the Debian-flavoured EMBOSS manual, bestie edition 🎀

okay so you found ontoisobsolete(1e) in the EMBOSS Manual for Debian and you're like "what is this tiny little guy". bestie. it's tiny but it's honest. let's get into it 🫶

✨ NAME ✨

ontoisobsolete — report whether an ontology term id is obsolete 💀

like, is that term dead? cancelled? no longer with us? this program will literally tell you. no cap.

🌸 SYNOPSIS 🌸

ontoisobsolete -oboterms obo -outfile outfile
ontoisobsolete -help

that's the whole vibe. two ways in: do the thing, or ask for help like a main character who reads the instructions 🌈

🦋 DESCRIPTION 🦋

ontoisobsolete is a command line program from EMBOSS (that's "the European Molecular Biology Open Software Suite" — an icon, an absolute legend, iykyk). 👑

it's part of the "Ontology,Data retrieval:Ontology data" command group(s). so like, it hangs out with the ontology data girlies. it's giving niche-but-essential. ✨

💖 OPTIONS 💖

🌸 Input section 🌸

  • -oboterms obo — this is your in. the obo terms go here. 🎀

💜 Additional section 💜

this section is empty in the original, bestie. not me hyping up a section with zero options in it 😭 but it's real, it exists, and we respect it.

🌟 Advanced section 🌟

also empty! two whole headings with nothing under them. it's giving "reserved seating". iconic behaviour honestly. 💅

🍓 Output section 🍓

  • -outfile outfile — where the answer goes.
    • Default value: stdout — so if you don't say anything, it just yells into your terminal. slay.

😭 BUGS 😭

found a bug? don't suffer in silence, tell someone! bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or you can go straight to the EMBOSS developers themselves (http://sourceforge.net/tracker/?group_id=93650&atid=605031). 🫶 they want to hear from you fr fr.

🔥 SEE ALSO 🔥

ontoisobsolete is fully documented via the tfm(1) system. so if you want the whole lore, that's where it lives. 📚✨

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. (the script did the work, they wrote the script. team effort. 💜)

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. periodt. 💅

okay so that's the whole page! EMBOSS 6.4.0, dated 05/11/2012, and you've officially read ONTOISOBSOLETE(1e) cover to cover. so proud of you bestie, go check some obo terms 🦋✨💖

📦 where this page comes from