ONTOGETROOT(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💅 ontogetroot — the manual, but make it make sense

okay bestie, so this is ONTOGETROOT(1e), straight out of the EMBOSS Manual for Debian. pull up a chair, grab a strawberry 🍓, we're getting you ontology root terms and we're doing it flawlessly.

✨ NAME ✨

ontogetroot — get ontology root terms by child identifier 🧬

like. you hand it a child term, it walks all the way up the family tree and gives you the roots. main character behaviour, honestly.

🌸 SYNOPSIS 🌸

ontogetroot -oboterms obo [-obsolete boolean] -outfile outobo

ontogetroot -help

🦋 DESCRIPTION 🦋

ontogetroot is a command line program from EMBOSS — that's "the European Molecular Biology Open Software Suite", no cap, that's the actual full name 💜.

It's part of the "Ontology,Data retrieval:Ontology data" command group(s). so yeah, it hangs out with the ontology data retrieval girlies.

👑 OPTIONS 👑

🎀 Input section

  • -oboterms obo — your input obo file, bestie. that's the whole vibe of this section, it's giving "give me the terms".

🌈 Additional section

  • -obsolete boolean — okay so by default this program does not use or return obsolete terms. the default behaviour is a hard no on the expired stuff. but if you set this option, it will include all terms. Default value: N.

⭐ Advanced section

literally nothing here, bestie. it's an empty section. an empty room. a vibe with no furniture. moving on 💀

💖 Output section

  • -outfile outobo — where the output obo goes. slay.

😭 BUGS 😭

found a bug? not the vibe, but okay. you can report them to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or directly to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031. they'll fix it, fr fr 🫶

👀 SEE ALSO 👀

ontogetroot is fully documented via the tfm(1) system. iykyk 📖✨

💜 AUTHOR 💜

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page.

they didn't hand-write this, they automated it, and honestly? iconic. 🤖

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

no gatekeeping here — the autogeneration is real and so is the licensing. redistributing under the same terms as EMBOSS, periodt 💅

and that's the whole page, bestie!! 🦋✨ this was the EMBOSS 6.4.0 era, dated 05/11/2012, and yes she's still out here being useful. go get those root terms, you absolute queen 👑💖

📦 where this page comes from