ONTOGETOBSOLETE(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

🌸 ontogetobsolete — the manual, but make it cute 🌸

okay so bestie, you found the ontogetobsolete page in the EMBOSS Manual for Debian and honestly? it's giving niche-but-iconic. this is a command line program from EMBOSS (that's "the European Molecular Biology Open Software Suite", no big deal 💅) and it lives in the command group "Ontology,Data retrieval:Ontology data". she's a real one.

✨ NAME ✨

ontogetobsolete — Get ontology ontology terms. yes that's the actual description, we don't make the rules, we just report them 🫶

✨ SYNOPSIS ✨

ontogetobsolete -oboterms obo [-subclasses boolean] -outfile outobo

ontogetobsolete -help

so it's literally that. -oboterms is required, -outfile is required, and -subclasses is optional and sits all cozy in brackets. and if you're lost, -help has your back 💖

✨ DESCRIPTION ✨

ontogetobsolete is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). she's part of the "Ontology,Data retrieval:Ontology data" command group(s). that's the whole vibe, no cap.

✨ OPTIONS ✨

🌈 Input section

  • -oboterms obo — this is your input, the obo terms you're feeding in. required, bestie, don't skip her.

🌈 Additional section

  • -subclasses boolean — extends the query matches so they also grab all the terms that are specialisations (sub-classes) of the matched terms. it's a yes/no situation. Default value: N — so out of the box she's a no 💀

🌈 Advanced section

  • nothing here. the section exists and it is empty. it's giving mysterious. we don't gatekeep, there's just literally nothing to tell you 🙈

🌈 Output section

  • -outfile outobo — where the outobo goes. your output file, required, periodt.

💀 BUGS 💀

found a bug? (not me manifesting that, but okay). you can report it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or slide directly into the EMBOSS developers' DMs via http://sourceforge.net/tracker/?group_id=93650&atid=605031. they want to know, fr fr.

🦋 SEE ALSO 🦋

ontogetobsolete is fully documented via the tfm(1) system. go read that if you want the full lore 👑

🎀 AUTHOR 🎀

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • they wrote the script that autogenerates this manual page. iconic behaviour honestly.

this manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. it can be redistributed under the same terms as EMBOSS itself. so like, share the love, follow the rules ✨

and that's the whole page, bestie 🫶 it came from EMBOSS 6.4.0, dated 05/11/2012, and yeah the footer says ONTOGETOBSOLETE(1e) which is very much the girl herself. slay, go get those ontology ontology terms 🌸💅🎀

📦 where this page comes from