ONTOGET(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 ONTOGET(1e) 💖

ok so this is the manual page for ontoget from the EMBOSS Manual for Debian, and bestie, we're gonna get you fluent in it. no gatekeeping here 🫶

🌸 NAME 🌸

ontoget — get ontology term(s). that's it, that's the whole job, and it does it beautifully ✨

🎀 SYNOPSIS 🎀

ontoget -oboterms obo [-subclasses boolean] [-obsolete boolean]
        -outfile outobo

ontoget -help

like, that's the vibe check right there. two ways in: the full run, or the lil -help cry for assistance 💅

🦋 DESCRIPTION 🦋

ontoget is a command line program from EMBOSS (aka “the European Molecular Biology Open Software Suite” — very demure, very molecular 🧬).

it's part of the "Ontology,Data retrieval:Ontology data" command group(s). so it hangs out with the ontology-retrieval girlies. iconic behavior, no cap ✨

✨ OPTIONS ✨

💜 Input section 💜

  • -oboterms obo — this is where you hand over your obo, your ontology terms input. the whole main character of the input situation 👑

🌈 Additional section 🌈

  • -subclasses boolean — this one extends the query matches so it also grabs all the terms that are specialisations (sub-classes) of the terms you matched. Default value: N. so by default, nope, we're not going down the subclass rabbit hole, bestie — you gotta opt in 🐇
  • -obsolete boolean — default behaviour is to not use or return obsolete terms. set this option and it'll include all the terms. Default value: N. so like, the dusty old terms stay in the vault unless you explicitly say "no fr, bring them out" 💀

🎀 Advanced section 🎀

ok so… there's nothing here. it's giving "empty section, but make it official." we still list it because the manual does, and we respect the structure 💅

🌸 Output section 🌸

  • -outfile outobo — where your results land. your output obo. your lil deliverable 🎁

🙈 BUGS 🙈

found a bug? not the vibe, but okay, let's handle it:

they want your bug reports, fr fr 🐛

👀 SEE ALSO 👀

ontoget is fully documented via the tfm(1) system. so if you want the deep lore, that's where it lives 📚

💖 AUTHOR 💖

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page.

yes, the manpage itself was autogenerated. the script is the real author here and we thank it for its service 🫡

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

periodt. that's the legal tea ☕

ok that's the whole page bestie, you're officially an ontoget expert now 💅✨

this was the EMBOSS 6.4.0 manual, dated 05/11/2012, living under the name ONTOGET(1e) — go forth and get those ontology terms, you absolute icon 🎀🦋💖

📦 where this page comes from