ONTOCOUNT(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

👑 ONTOCOUNT — count ontology term(s), bestie

okay so this is the page for ontocount, and it lives in manual section 1e (that's the ONTOCOUNT(1e) you'd see in the header, if headers were giving). it's a lil command line program, and honestly? it's serving.

💖 NAME 💖

ontocount — count ontology term(s). that's it. that's the job. iconic.

✨ SYNOPSIS ✨

ontocount -oboterms obo -subclasses boolean -obsolete boolean
          -outfile outfile

ontocount -help

look at her. four flags and a help. no notes. 💅

🦋 DESCRIPTION 🦋

ontocount is a command line program from EMBOSS — and for the uninitiated, that's "the European Molecular Biology Open Software Suite". she's part of the "Ontology" command group(s), so if you're deep in ontology land, this is your girl fr fr.

🎀 OPTIONS 🎀

🌸 Input section 🌸

  • -oboterms obo — this is the input, babes. it's listed right here under Input, and that's genuinely all the description we get, so that's all I'm giving you. no cap.

🌈 Additional section 🌈

okay so this section is just… vibes. it exists, it's titled, and there's absolutely nothing under it. not a single option. we respect the empty space. 🙈

⭐ Advanced section ⭐

  • -subclasses boolean — turn this on and the query matches get extended so they also pull in all the terms that are specialisations (aka sub-classes) of the terms you matched. Default value: N. so like, default is nah, and you gotta opt in. 🫶
  • -obsolete boolean — the default behaviour is to not use or return obsolete terms. set this option and it will include all the terms instead. Default value: N. choose wisely bestie, obsoletes are giving dusty. 💀

🍓 Output section 🍓

  • -outfile outfile — where the results go. Default value: stdout, meaning she'll just spill it right into your terminal like a true main character. 🌟

🧚 BUGS 🧚

found something cursed? bugs can be reported to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or you can go straight to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031. they wanna hear it, fr fr. 💜

👑 SEE ALSO 👑

ontocount is fully documented via the tfm(1) system. so if you need the whole lore, that's where the lore lives. iykyk.

💅 AUTHOR 💅

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page.

genuinely the reason this page exists at all. slay. 🙇‍♀️

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. so, like, same rules as EMBOSS, periodt. 🎀

and that's the whole page, bestie!! this is from EMBOSS 6.4.0, dated 05/11/2012, and it's the ONTOCOUNT(1e) manual. go count some ontology terms and be iconic about it. mwah. 💖✨

📦 where this page comes from