NOTSEQ(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

NOTSEQ(1e) 💖

okay bestie, so this is a page from the EMBOSS Manual for Debian, and we're talking about notseq(1e) — she's a whole vibe and she's about to become your new fave ✨

🌸 NAME 🌸

notseq — write to file a subset of an input stream of sequences 🦋

✨ SYNOPSIS ✨

notseq -sequence seqall -exclude string -outseq seqoutall
       [-junkoutseq seqoutall]

notseq -help

like, that's the whole thing. two ways in: the real run, and the cry-for-help run 💅

💜 DESCRIPTION 💜

notseq is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). She's part of the "Edit" command group(s), so she's out here editing your sequence streams, no cap. 🎀

🎀 OPTIONS 🎀

🌈 Input section 🌈

  • -sequence seqall — the sequences you're feeding in, bestie 🫶

💅 Required section 💅

  • -exclude string — Enter a list of sequence names or accession numbers to exclude from the sequences read in. The excluded sequences will be written to the file specified in the 'junkout' parameter. The remainder will be written out to the file specified in the 'outseq' parameter. The list of sequence names can be separated by either spaces or commas. The sequence names can be wildcarded. The sequence names are case independent. An example of a list of sequences to be excluded is: myseq, hs*, one two three a file containing a list of sequence names can be specified by giving the file name preceded by a '@', eg: '@names.dat' ✨
not me pointing out that the "separated by spaces or commas" thing means you can absolutely just vibe and mix them up. case independent too, so she literally does not care about your capitalisation era 💀

🦋 Output section 🦋

  • -outseq seqoutall — the main character output file, where the sequences you kept go 👑
  • -junkoutseq seqoutall — This file collects the sequences which you have excluded from the main output file of sequences. Default value: /dev/null 🗑️
lowkey iconic that the default for the junk pile is /dev/null — she just throws the rejected sequences into the void and moves on. periodt.

💀 BUGS 💀

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). 🐛

ngl if you find a bug, tell them — they wanna know, fr fr 🙈

🌟 SEE ALSO 🌟

notseq is fully documented via the tfm(1) system. so if you want the deep lore, that's where it lives 📖✨

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. 🤖

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. 📜

and that's the whole page, bestie — EMBOSS 6.4.0, dated 05/11/2012, autogenerated with love (well, with a script) and living her best life in the Debian archives 🎀💖✨ slay, go exclude some sequences 🦋

📦 where this page comes from