NEWCPGSEEK(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 newcpgseek — it's giving CpG island detective 💖

okay so bestie, welcome to newcpgseek, and yeah the manual name is the EMBOSS Manual for Debian because this lil cutie ships in the EMBOSS suite, slay. 🎀

✨ NAME ✨

newcpgseek — Identify and report CpG-rich regions in nucleotide sequence(s)

Like literally, that's the whole job. You hand it sequences, it goes "ooh this bit is CpG-rich" and tells you. Iconic behaviour. 💅

🌸 SYNOPSIS 🌸

newcpgseek -sequence seqall -score integer -outfile outfile

newcpgseek -help

That's the whole vibe. Three options for the actual run, or just -help if you're lost (no shame, we've all been there 🫶).

🦋 DESCRIPTION 🦋

newcpgseek is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). She's a proper little terminal girlie — no fancy GUI, just vibes and flags. 💜

She belongs to the "Nucleic:CpG Islands" command group(s), so if you're browsing the family tree, that's where you'll find her. 🌈

👑 OPTIONS 👑

🍓 Input section

  • -sequence seqall — this is where you drop your sequence(s) in, bestie. seqall type, so she's not picky.

⭐ Required section

  • -score integer — the score you're playing with.
    • Default value: 17
    • Like, don't skip this one, it's in the required section for a reason. 😭

🎀 Output section

  • -outfile outfile — where the results go. Give her a file to write into and she'll do the rest. ✨

💀 BUGS 💀

Found a bug? Not me being the bearer of bad news, but here's where to snitch: 🐛

Report responsibly. Be kind. The devs are people too. 🫶

🧚 SEE ALSO 🧚

newcpgseek is fully documented via the tfm(1) system. iykyk. 💫

💖 AUTHOR 💖

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. (Yes, a script wrote the OG. Respect the automation era. 👑)

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. So like, same energy, same rules. 🎀

Sign-off time, bestie: this whole thing came to you courtesy of EMBOSS 6.4.0, dated 05/11/2012, and yeah the manual name is NEWCPGSEEK(1e) — now go find those CpG-rich regions, you absolute main character. 💅✨🦋

📦 where this page comes from