NEWCPGREPORT(1e)

✨ NEWCPGREPORT(1e) ✨

okay bestie, so this is newcpgreport — and yes it comes straight out of the EMBOSS Manual for Debian, so you know it's legit 💖

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🌸 NAME 🌸

newcpgreport — identify CpG islands in nucleotide sequence(s) 🧬✨

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🎀 SYNOPSIS 🎀

newcpgreport -sequence seqall -window integer -shift integer
             -minlen integer -minoe float -minpc float -outfile outfile

newcpgreport -help

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🦋 DESCRIPTION 🦋

So newcpgreport is a command line program from EMBOSS, aka “the European Molecular Biology Open Software Suite” — she's fancy, she's European, she's iconic 👑. She lives in the "Nucleic:CpG Islands" command group(s), so if you were wondering where she hangs out in the command family tree, that's the vibe. 💅

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🌈 OPTIONS 🌈

💜 Input section

• -sequence seqall — this is where you hand her your sequence(s), bestie. Feed her the goods. 🍓

✨ Required section

• -window integer — Default value: 100. yes the window is required, and yes it's got a default, make it make sense 💀
• -shift integer — Default value: 1
• -minlen integer — Default value: 200
• -minoe float — Default value: 0.6
• -minpc float — Default value: 50.

🌸 Output section

• -outfile outfile — where the results go, put it somewhere cute 🎀

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💀 BUGS 💀

Found a bug? Not the vibe, but okay, report it 🫶. You can send it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or go straight to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031. They'll handle it, fr fr.

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🔥 SEE ALSO 🔥

newcpgreport is fully documented via the tfm(1) system. iykyk ✨

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💖 AUTHOR 💖

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

• Wrote the script used to autogenerate this manual page. giving automation, slay 🤖💅

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👑 COPYRIGHT 👑

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. 📜

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and that's the whole page bestie, no cap — every flag, every default, every link, all of it 🫶

EMBOSS 6.4.0 · 05/11/2012 · NEWCPGREPORT(1e) — mwah, that's the version and date, we're done here 💋✨