NEWCOILS(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 NEWCOILS(1e) — like, the manual page for newcoils 💖

okay bestie, gather round, because this is the newcoils page from the EMBOSS Manual for Debian and it's genuinely serving ✨ protein science ✨. Let's get into it 🫶

✨ NAME ✨

newcoils — predicts coils protein secondary structure 🌀

🌸 SYNOPSIS 🌸

newcoils -sequence seqall -datafile datafile -window integer
         -weighted integer -verb integer -mode integer -minseg integer
         -minp float -outfile outfile

newcoils -help

🦋 DESCRIPTION 🦋

newcoils is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). No cap, that's the whole suite, iconic.

It's part of the "Protein:2D Structure" command group(s). So it's hanging out with the structure girlies, as it should 💅

🎀 OPTIONS 🎀

💜 Input section 💜

  • -sequence seqall — hand over your sequence, bestie 🧬
  • -datafile datafile — the data file it reads.
    • Default value: Enewcoils.mat

🔥 Required section 🔥

  • -window integer — the window.
    • Default value: 21
  • -weighted integer — weighted mode toggle situation.
  • -verb integer — verbosity. yes she talks a lot, let her 💬
  • -mode integer — the mode.
  • -minseg integer — minimum segment length.
    • Default value: 1
  • -minp float — minimum probability.
    • Default value: 0.50

🍓 Output section 🍓

  • -outfile outfile — where the results go. your output file, your main character moment 💾

💀 BUGS 💀

Found a bug? It's giving unwell 😭 Report it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or slide directly into the EMBOSS developers' DMs at http://sourceforge.net/tracker/?group_id=93650&atid=605031.

🌈 SEE ALSO 🌈

newcoils is fully documented via the tfm(1) system. iykyk 👑

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. (the script did the typing, the team ate 💅)

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

okay that's the whole page, no skips, no summaries, we kept every single flag and default because that's the vibe 🫶✨

and that's a wrap on the EMBOSS 6.4.0 version of this page, dated 05/11/2012 — periodt, bestie 💖

📦 where this page comes from