MSBAR(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 MSBAR(1e) 💖

okay bestie, welcome to the EMBOSS Manual for Debian page for msbar — the manual, she's called MSBAR(1e), and we are going to read her together like it's a group chat at 2am. 🫶

✨ NAME ✨

msbar — Mutate a sequence 🧬💅

🌸 SYNOPSIS 🌸

msbar -sequence seqall -othersequence seqall -count integer -point list
      -block list -codon list -inframe boolean -minimum integer
      -maximum integer -outseq seqoutall

msbar -help

🦋 DESCRIPTION 🦋

msbar is a command line program straight out of EMBOSS — that's “the European Molecular Biology Open Software Suite”, no cap. She belongs to the "Nucleic:Mutation,Protein:Mutation" command group(s), so like, she's literally in her mutation era. 🔥

👑 OPTIONS 👑

🎀 Input section

  • -sequence seqall — the sequence you're feeding in, bestie. the main character. 💜
  • -othersequence seqall — okay so this one is giving very specific. If you need the mutated sequence to NOT match some set of other sequences, you drop that set right here. For example, if you require that the mutated sequence should not be the same as the input sequence, enter the input sequence here. Want the result to be different from previous results of this program? Specify the previous result sequences here. The program will check that the result does not match the sequences specified here before writing it out. And if a match is found? 😭 the mutation is started again with a fresh copy of the input sequence. And if, after 10 such retries, there's still a match to the set of sequence given here, then the matching mutated sequence is written — but with a warning message. so rude of it, honestly. Default value: asis:N

⭐ Required section

  • -count integer — how many. Default value: 1
  • -point list — points, babes. ✨
  • -block list — blocks. ✨
  • -codon list — the types of codon mutations to perform. heads up though: these are only done if the sequence is nucleic. 🧬

🧚 Additional section

  • -inframe boolean — Default value: N

🔥 Advanced section

  • -minimum integer — Default value: 1
  • -maximum integer — Default value: 10

🌈 Output section

  • -outseq seqoutall — where your little mutated baby goes. 💖

💀 BUGS 💀

found a bug? not the vibe. 😭 Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

🌸 SEE ALSO 🌸

msbar is fully documented via the tfm(1) system. iykyk. 💅

🫶 AUTHOR 🫶

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. iconic behaviour, honestly. 👑

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

and that's the whole page, bestie!! 🦋 this was EMBOSS version 6.4.0, dated 05/11/2012, and it's page MSBAR(1e) — slay, periodt. 💖✨🎀

📦 where this page comes from