MEGAMERGER(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 MEGAMERGER(1e) 💖

okay bestie, welcome to the EMBOSS Manual for Debian — this is the page for megamerger, and I promise it's more fun than it sounds. 🧚✨

✨ NAME ✨

megamerger — merge two large overlapping DNA sequences 🧬🫶

🌸 SYNOPSIS 🌸

megamerger -asequence sequence -bsequence sequence -wordsize integer
           [-prefer boolean] -outseq seqout -outfile outfile

megamerger -help

literally the whole vibe in two lines, no cap.

🦋 DESCRIPTION 🦋

megamerger is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). 💅

It is part of the "Alignment:Consensus" command group(s).

🎀 OPTIONS 🎀

💜 Input section

  • -asequence sequence — the first sequence goes here, bestie 🍓
  • -bsequence sequence — and here's the second one 🌸

⭐ Required section

  • -wordsize integer — the word size, you gotta give it. Default value: 20.

🔥 Additional section

  • -prefer boolean — okay so here's the drama:</persist> when a mismatch between the two sequences is discovered, one or the other of the two sequences must be used to create the merged sequence over this mismatch region. The default action is to create the merged sequence using the sequence where the mismatch is closest to that sequence's centre. But if this option is used, then the first sequence (seqa) will always be used in preference to the other sequence when there is a mismatch. Default value: N.

👑

💖 Output section

  • -outseq seqout — where the merged sequence goes ✨
  • -outfile outfile — and where the report goes 🎀

💀 BUGS 💀

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

ngl if you find one, tell them, they wanna know fr fr 🙈

🌈 SEE ALSO 🌈

megamerger is fully documented via the tfm(1) system.

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. 🛠️

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

and that's the whole page bestie, you ate that 💖 this was EMBOSS 6.4.0, dated 05/11/2012 — mwah, periodt. 🎀✨

📦 where this page comes from