MARTQUERY(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 MARTQUERY — like, the manual page bestie 💖

okay so you're reading the martquery(1e) page from the EMBOSS Manual for Debian and honestly? you came to the right place. sit down, grab a strawberry, let's go 🍓

✨ NAME ✨

martquery — perform a biomart query

no cap, that's literally the whole job. it does a biomart query. iconic behavior honestly 👑

🦋 SYNOPSIS 🦋

martquery -dataset string -attributes string -filters string
          -host string -path string -port integer -outfile outfile

martquery -help

so the vibe is: you feed it a dataset, some attributes, some filters, then you tell it where the mart lives (-host, -path, -port), and you tell it where to dump the goods (-outfile). or you just hit it with -help and let it explain itself. both are valid 💅

🌸 DESCRIPTION 🌸

martquery is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). it's part of the "Edit" command group(s). yes bestie, the Edit girlies. we love a crossover 🫶

🎀 OPTIONS 🎀

💜 Input section

  • -dataset string — the dataset you're querying. default value is drerio_gene_ensembl. that's the zebrafish one, in case you were wondering. very slay of the zebrafish honestly 🐟
  • -attributes string — what columns/fields you want back. default value is ensembl_gene_id,ensembl_transcript_id. two of them, comma-separated, just like that ✨
  • -filters string — what you're filtering by. default value is with_transmembrane_domain. so by default it's giving "only the ones with a transmembrane domain" energy 🧚

🌈 Advanced section

  • -host string — the host you're talking to. default value is www.biomart.org. that's the biomart house, that's where the party's at 🏠
  • -path string — the path on that host. default value is /biomart/martservice. the little doorway to the mart service, iykyk 🚪
  • -port integer — the port. default value is 80. classic. old faithful. the default-default 🔥

💖 Output section

  • -outfile outfile — where your results go. the little file that catches everything you asked for. give it a name, bestie, don't leave it nameless 😭

💀 BUGS 💀

found a bug? not you being a detective, we love that 🕵️‍♀️ report it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or slide directly into the EMBOSS developers' DMs at http://sourceforge.net/tracker/?group_id=93650&atid=605031.

seriously though, report the bugs. they can't fix what they don't know about, and silence helps nobody 🙈

👑 SEE ALSO 👑

martquery is fully documented via the tfm(1) system. so if you want the full lore, that's your portal 🌟

⭐ AUTHOR ⭐

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. absolute icons, the autogeneration is doing numbers 💅

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

and that's the whole thing, bestie. you ate this manual page fr fr 💖

EMBOSS 6.4.0 · 05/11/2012 · MARTQUERY(1e) — yeah this page is vintage but she still serves ✨🎀💜

📦 where this page comes from