GOSEQ(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

🧬 GOSEQ(1e) — the "which sequences have these GO terms" girlie 💅

ok bestie so this is from the EMBOSS Manual for Debian, and it's about goseq, which is a whole command line program from EMBOSS — that's "the European Molecular Biology Open Software Suite" in case you were wondering 🫶 — and she belongs to the "Edit" command group(s). periodt.

✨ NAME ✨

goseq — Identify sequence entries containing GO terms 🎀

✨ SYNOPSIS ✨

goseq -sequence seqall -term string -outfile outfile

goseq -help

✨ DESCRIPTION ✨

okay so goseq is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite", yes that's the whole name, she's iconic). It is part of the "Edit" command group(s). that's the vibe. that's the whole lore. 💖

✨ OPTIONS ✨

💖 Input section 💖

  • -sequence seqall — the sequences you're feeding her, bestie. 🦋
  • -term string — This is the name of a term from the GO ontology. If you are not sure what names are available, use ontoget. no cap, just go ask ontoget, she knows. 🔥

🎀 Required section 🎀

like... it's a section, and it's required. nothing more to say. the emptiness is the moment. 💀

🌸 Additional section 🌸

also here. also empty. also serving absolutely nothing and that's okay. 🙈

🧚 Advanced section 🧚

the advanced section is in the building, and she has no options. lowkey relatable. ✨

💜 Output section 💜

  • -outfile outfile — The list of sequence names will be written to this list file. that's where your girls get listed, bestie. 📝

💀 BUGS 💀

not the bugs section 😭 okay so if something's cursed, bugs can be reported to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or directly to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031. they're lovely, they'll handle it, go tell them. 🫶

👑 SEE ALSO 👑

goseq is fully documented via the tfm(1) system. so if you want the deep lore, that's where it lives. iykyk. ⭐

🦋 AUTHOR 🦋

  • Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
    • Wrote the script used to autogenerate this manual page. she's the main character behind the curtain fr fr. 💅

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. same terms, same energy, keep it legal bestie. 🍓

and that's the whole page, bestie!! this lil manual is EMBOSS 6.4.0, dated 05/11/2012, and she goes by GOSEQ(1e). mwah. 💖✨🎀

📦 where this page comes from