GODEF(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ GODEF(1e) ✨

okay so bestie, welcome to godef — the 1e manual page, part of the EMBOSS Manual for Debian fam 💖 pull up a chair, grab a strawberry 🍓, we're gonna find GO ontology terms by their definition and we're gonna slay while doing it.

🌸 NAME 🌸

godef — find GO ontology terms by definition 🧚

🎀 SYNOPSIS 🎀

godef -query string [-namespace list] -subclasses boolean
      -obsolete boolean -godef outobo

godef -help

👑 DESCRIPTION 👑

So godef is a command line program from EMBOSS (aka “the European Molecular Biology Open Software Suite” 💅) and it's living its best life as part of the "Ontology:GO,Data retrieval:Ontology data" command group(s). iconic honestly.

✨ OPTIONS ✨

💜 Input section

  • -query string — you give it a query string, that's the whole vibe. it's the thing we're searching for 🫶

🌈 Additional section

  • -namespace list — by default all the terms get returned, no cap. but if you wanna be picky you can limit the search to one namespace or a few of them. default value: * (yes, literally everything, she contains multitudes ✨)

🔥 Advanced section

  • -subclasses boolean — turn this on and the query matches get extended to include all the terms that are specialisations (GO sub-classes) of the matched type. like, the whole family tree, not just the one term 👑 default value: N
  • -obsolete boolean — default behaviour is to not use or return obsolete terms (we don't do outdated energy here 💀). but if you set this option, it will include all terms. default value: N

🦋 Output section

  • -godef outobo — where the output goes, your outobo file, that's the destination bestie 💖

💀 BUGS 💀

Found a bug? not me manifesting problems but okay 🙈 you can report it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or you can go straight to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031. they'll sort you out 🫶

🎀 SEE ALSO 🎀

godef is fully documented via the tfm(1) system. iykyk ⭐

🌸 AUTHOR 🌸

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. (the script ate, ngl 💅)

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. periodt ✨

and that's the whole page, bestie 🎀 mwah! this lil manual was brought to you by EMBOSS 6.4.0, dated 05/11/2012 — yes she's vintage, she's timeless, she's a classic 👑 go find some ontology terms fr fr 🦋💖

📦 where this page comes from