FUZZPRO(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💅 FUZZPRO(1e) — it's giving "EMBOSS Manual for Debian" energy

okay bestie, sit down, hydrate, because we're about to find patterns in protein sequences and it's gonna be so good 🦋

✨ NAME ✨

fuzzpro — search for patterns in protein sequences 🔍🧬

🌸 SYNOPSIS 🌸

fuzzpro -sequence seqall -pattern pattern -outfile report

fuzzpro -help

👑 DESCRIPTION 👑

fuzzpro is a command line program from EMBOSS, aka “the European Molecular Biology Open Software Suite”. no cap, that's literally what it stands for 💖

It's part of the "Protein:Motifs" command group(s), so if you're vibing in motif-land, this is your girl. 💅

🎀 OPTIONS 🎀

🍓 Input section

  • -sequence seqall — your sequences, bestie. that's the input 🫶
  • -pattern pattern — the pattern you're hunting for. The standard IUPAC one-letter codes for the amino acids are used. The symbol 'x' is used for a position where any amino acid is accepted. Ambiguities are indicated by listing the acceptable amino acids for a given position, between square parentheses '[ ]'. For example: [ALT] stands for Ala or Leu or Thr. Ambiguities are also indicated by listing between a pair of curly brackets '{ }' the amino acids that are not accepted at a given position. For example: {AM} stands for any amino acid except Ala and Met. Each element in a pattern is separated from its neighbor by a '-'. (Optional in fuzzpro). Repetition of an element of the pattern can be indicated by following that element with a numerical value or a numerical range between parenthesis. Examples: x(3) corresponds to x-x-x, x(2,4) corresponds to x-x or x-x-x or x-x-x-x. When a pattern is restricted to either the N- or C-terminal of a sequence, that pattern either starts with a '<' symbol or respectively ends with a '>' symbol. A period ends the pattern. (Optional in fuzzpro). For example, [DE](2)HS{P}X(2)PX(2,4)C 🌈

💜 Output section

  • -outfile report — where the report goes. write it down, keep it cute 📝

😭 BUGS 😭

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

found a bug? don't be shy, tell the grown-ups. they wanna know fr fr 🐛

🫶 SEE ALSO 🫶

fuzzpro is fully documented via the tfm(1) system. iykyk 📖

🌟 AUTHOR 🌟

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. iconic behavior honestly 💀✨

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

and that's the whole vibe, bestie. go forth and fuzz. periodt. 💅

EMBOSS 6.4.0 · 05/11/2012 — mwah, love u, bye 🎀🦋💖

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