EXTRACTSEQ(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ EXTRACTSEQ(1e) ✨

okay so bestie, this is a page from the EMBOSS Manual for Debian and it's about a little tool called extractseq and honestly? iconic. 💖

🌸 NAME 🌸

extractseq — extract regions from a sequence 🧚

✨ SYNOPSIS ✨

extractseq -sequence sequence -regions range [-separate boolean]
           -outseq seqoutall

extractseq -help

that's the whole vibe right there. two ways in: the real run, and the lil help flag. 💅

💫 DESCRIPTION 💫

extractseq is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). no cap, that's the actual expansion.

It is part of the "Edit" command group(s). 🎀 so it hangs out with the other editing girlies.

🎀 OPTIONS 🎀

🌈 Input section 🌈

  • -sequence sequence — the sequence you're working with, bestie. 🦋

💜 Required section 💜

  • -regions range — Regions to extract. A set of regions is specified by a set of pairs of positions. The positions are integers. They are separated by any non-digit, non-alpha character. like, ANY non-digit non-alpha separator, she's flexible fr fr. Examples of region specifications are: 24-45, 56-78 1:45, 67=99;765..888 1,5,8,10,23,45,57,99 Default value: $(sequence.begin)-$(sequence.end) — so if you don't say anything she just takes the whole thing, main character energy. ✨

🦋 Additional section 🦋

  • -separate boolean — If this is set true then each specified region is written out as a separate sequence. The name of the sequence is created from the name of the original sequence with the start and end positions of the range appended with underscore characters between them, eg: XYZ region 2 to 34 is written as: XYZ_2_34 Default value: N 🌸

🍓 Output section 🍓

  • -outseq seqoutall — where the extracted goodies go. 💖

💀 BUGS 💀

not the bugs section 😭 but okay we ball.

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). 🐛

👑 SEE ALSO 👑

extractseq is fully documented via the tfm(1) system. iykyk 💅

🌟 AUTHOR 🌟

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. shoutout to the script honestly. 🫶

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. periodt.

and that's the whole page bestie!! this one came from EMBOSS 6.4.0 dated 05/11/2012 and yeah, it's the EXTRACTSEQ(1e) page. slay, go extract some regions. 🔥✨

📦 where this page comes from