EXTRACTALIGN(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 EXTRACTALIGN(1e) 💖

okay so bestie, welcome to the manual page for extractalign, straight outta the EMBOSS Manual for Debian. this is extractalign(1e), and it's about to be your new fave. periodt.

✨ NAME ✨

extractalign — Extract regions from a sequence alignment 🎀

🌸 SYNOPSIS 🌸

extractalign -sequence seqset -regions range -outseq seqoutall

extractalign -help

🦋 DESCRIPTION 🦋

extractalign is a command line program from EMBOSS — that's “the European Molecular Biology Open Software Suite”, no cap. it's lowkey iconic.

it belongs to the "Alignment,Data retrieval:Sequence data,Edit" command group(s), so if you're out here slicing up alignments, you're in the right place, bestie. 🫶

💅 OPTIONS 💅

🍓 Input section

  • -sequence seqset — your input, the sequence set you're working with. drop it here.

👑 Required section

  • -regions range — Regions to extract. so a set of regions gets specified by a set of pairs of positions. the positions are integers, and they're separated by any non-digit, non-alpha character — so basically whatever weird little punctuation you vibe with.

examples of region specifications are: 24-45, 56-78, 1:45, 67=99;765..888, 1,5,8,10,23,45,57,99

Default value: $(sequence.begin)-$(sequence.end)

🌈 Output section

  • -outseq seqoutall — where the extracted goodness goes. your output sequence all. ✨

💀 BUGS 💀

found a bug? nooo 😭 not the bugs. report them to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or slide directly into the EMBOSS developers' DMs at http://sourceforge.net/tracker/?group_id=93650&atid=605031.

🔥 SEE ALSO 🔥

extractalign is fully documented via the tfm(1) system. iykyk. 💜

🧚 AUTHOR 🧚

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. main character energy, honestly. 👑

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

okay that's the whole thing, bestie, no skips, no summaries, we ate and left no crumbs 🍓💅

EMBOSS 6.4.0 · 05/11/2012 · EXTRACTALIGN(1e) — mwah, bye! 🎀✨

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