ETANDEM(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

👑 ETANDEM — ok so, tandem repeat finder, the 1e one, EMBOSS Manual for Debian energy 💅

bestie. sit down. we're finding tandem repeats in a nucleotide sequence and we're gonna be SO normal about it. the manual page name is etandem and honestly? she's iconic.

✨ NAME ✨

etandem — finds tandem repeats in a nucleotide sequence 🧬🔁

🌸 SYNOPSIS 🌸

etandem -sequence sequence -minrepeat integer -maxrepeat integer
        -threshold integer -mismatch boolean -uniform boolean
        -outfile report -origfile outfile

etandem -help

like, that's the whole vibe. no notes. 😌

🦋 DESCRIPTION 🦋

so etandem is a command line program from EMBOSS — that's “the European Molecular Biology Open Software Suite,” yes that's the whole name, it's giving acronym-that-ate — and she is part of the "Nucleic:Repeats" command group(s). that's the friend group. that's where she sits at lunch. 🫶

🎀 OPTIONS 🎀

💖 Input section 💖

  • -sequence sequence — this is the input sequence, the raw material, the moment. feed her the sequence. ✨

🌈 Required section 🌈

  • -minrepeat integer — the minimum repeat length you'll accept. default value: 10. she does NOT go lower unless you say so. periodt.
  • -maxrepeat integer — the maximum repeat length. default value: $(minrepeat). yes bestie, the default is literally whatever you set minrepeat to — she's copying her own homework and honestly? relatable. 🙈

🔥 Advanced section 🔥

  • -threshold integer — the threshold. default value: 20. it's a whole number and it matters. 💅
  • -mismatch boolean — a boolean flag. on or off, that's the whole personality. ⭐
  • -uniform boolean — another boolean flag. yes it's in the advanced section. yes you still have to know about it. no we don't gatekeep. 👑

🍓 Output section 🍓

  • -outfile report — where the report goes. give her a report file. she deserves one. 🎀
  • -origfile outfile — the orig file, which is an outfile. the file, the original one. lowkey meta but okay. 💜

💀 BUGS 💀

found a bug? not her fault but also report it anyway, that's how we grow 🌱. bugs can be reported to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or you can go directly to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031. go off, tell them everything. they're listening. probably. 🫶

👀 SEE ALSO 👀

etandem is fully documented via the tfm(1) system. iykyk. read the tfm, bestie, it's literally right there. 📖✨

💖 AUTHOR 💖

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page.

shoutout to the team, the script wrote this whole thing automatically and we're all just vibing in its shadow. main character energy honestly. 🌟

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. no cap, that's the actual license situation. 📜✨

ok but FR FR: don't skip the sections, don't skip the defaults, don't skip the booleans. every option here is load-bearing. the vibe is soft, the details are not. 💅

EMBOSS 6.4.0 · dated 05/11/2012 · that's the source/version and the date, mwah, and that's the whole ETANDEM(1e) page. love u, go find some tandem repeats, slay 🦋💖🎀

📦 where this page comes from