EINVERTED(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 EINVERTED 💖

okay so bestie, welcome to the EINVERTED(1e) page — straight out of the EMBOSS Manual for Debian, and yes we are reading it together, hydration check first, then we go 💅

✨ NAME ✨

einverted — finds inverted repeats in nucleotide sequences 🧬🔄

🌸 SYNOPSIS 🌸

einverted -sequence seqall -gap integer -threshold integer
          -match integer -mismatch integer [-maxrepeat integer]
          -outfile outfile -outseq seqout

einverted -help

🦋 DESCRIPTION 🦋

einverted is a command line program from EMBOSS (which stands for “the European Molecular Biology Open Software Suite”, no cap). It's part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s), so it's giving structural-repeat realness 🎀

👑 OPTIONS 👑

🍓 Input section

  • -sequence seqall — hand over your sequence(s) here, bestie

💜 Required section

  • -gap integer — Default value: 12
  • -threshold integer — Default value: 50
  • -match integer — Default value: 3
  • -mismatch integer — Default value: -4
not me pointing out that these are literally required — you can't skip them 🙈

🌈 Additional section

  • -maxrepeat integer — maximum separation between the start of the repeat and the end of the inverted repeat. Default value: 2000

✨ Output section

  • -outfile outfile — where the goods go
  • -outseq seqout — the sequence of the inverted repeat regions without gap characters 💅

💀 BUGS 💀

Found a bug? First of all, iconic of you for noticing 🫶 Report it to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or go straight to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

🎀 SEE ALSO 🎀

einverted is fully documented via the tfm(1) system. iykyk ✨

🌟 AUTHOR 🌟

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • wrote the script used to autogenerate this manual page. slay, honestly 👑

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

and that's the whole page, bestie — every flag, every default, nothing skipped, periodt 💖

EMBOSS 6.4.0 · 05/11/2012 · mwah, go run it 🦋✨

📦 where this page comes from