EDIALIGN(1e)

👑 EDIALIGN — local multiple alignment of sequences, bestie 💅

okay so this is edialign, and it lives in the EMBOSS manual for Debian (section 1e, for the record ✨). Come sit with me, we're gonna align some sequences together and it's gonna be iconic.

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🌸 SYNOPSIS 🌸

edialign -sequences seqset -nucmode list -revcomp boolean
         [-overlapw selection] [-linkage list] [-maxfragl integer]
         -fragmat boolean -fragsim integer [-itscore boolean]
         [-threshold float] -mask boolean -dostars boolean
         -starnum integer -outfile outfile -outseq seqoutall

edialign -help

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💖 DESCRIPTION 💖

edialign is a command line program from EMBOSS, aka "the European Molecular Biology Open Software Suite" — yes that's the whole name, slay. It's part of the "Alignment:Multiple" command group(s), so if you're doing multi-sequence alignment things, this is your girl 🫶

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✨ OPTIONS ✨

🎀 Input section

• -sequences seqset — this is your sequence set going in. That's the whole note, no cap, they really just left it at that 💀

🧚 Additional section

• -nucmode list — nucleic acid sequence alignment mode. Your options are simple, translated or mixed. Default value: n
• -revcomp boolean — no description given, just a default. Default value: N
• -overlapw selection — by default, overlap weights are used when Nseq =<35, but you can set this to 'yes' or 'no'. Default value: default (when Nseq =< 35)
• -linkage list — the clustering method used to construct the sequence tree. Pick from UPGMA, minimum linkage or maximum linkage. Default value: UPGMA
• -maxfragl integer — Default value: 40
• -fragmat boolean — Default value: N
• -fragsim integer — Default value: 4
• -itscore boolean — Default value: N
• -threshold float — Default value: 0.0

🌈 Output section

• -mask boolean — Default value: N
• -dostars boolean — Default value: N
• -starnum integer — Default value: 4
• -outfile outfile — your output file, and again, no extra notes, we move 🌸
• -outseq seqoutall — your output sequence set, same energy 💜

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💀 BUGS 💀

Found a bug? Not the vibe, but okay, report it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or take it straight to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031.

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🔥 SEE ALSO 🔥

edialign is fully documented via the tfm(1) system. So if you want the full lore, that's where it's at, iykyk 👑

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🦋 AUTHOR 🦋

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

• Wrote the script used to autogenerate this manual page. (the script did the typing, they get the credit, we love a delegation moment 💅)

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⭐ COPYRIGHT ⭐

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

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and that's the whole page, bestie 🎀 this was EMBOSS 6.4.0, dated 05/11/2012, and it's the EDIALIGN(1e) page — go align something gorgeous, ily, bye ✨💖