EDAMISID(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 EDAMISID(1e) 💖

okay bestie, so this is edamisid from the EMBOSS Manual for Debian — yes, manual section 1e, yes it's giving very specific, and yes we're gonna get through it together. grab a snack 🍓

✨ NAME ✨

edamisid — find EDAM ontology terms by is_identifier_of relation

like. it finds EDAM terms. via the is_identifier_of relation. that's the whole vibe. 🦋

🌸 SYNOPSIS 🌸

edamisid -identifier string [-namespace list] -sensitive boolean
         -subclasses boolean -obsolete boolean -edamisid outobo

edamisid -help

okay so the [-namespace list] is in brackets which means it's optional, but the rest are just. there. staring at you. no cap. 👑

💅 DESCRIPTION 💅

edamisid is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). it's literally part of the Ontology:EDAM,Data retrieval:Ontology data command group(s). iconic behaviour, honestly. ✨

🎀 OPTIONS 🎀

🫶 Input section

  • -identifier string — this is the identifier you're feeding in. that's it. that's the input. go off. 💜

🌈 Additional section

  • -namespace list — so by default, ALL terms come back, every single one, the whole squad. but if you want, you can limit your search to one namespace or a few namespaces. Default value: * (which is the "everyone's invited" setting 💖)

🔥 Advanced section

  • -sensitive boolean — okay so here's the deal: by default, your query keywords get matched against the EDAM term names (and synonyms) only. that's it. but if you turn this on, it ALSO matches your keywords against the EDAM term definitions, which means it will (typically) report more matches. more matches, more chaos, more fun. Default value: N
  • -subclasses boolean — this one extends your query matches to include all terms which are specialisations (EDAM sub-classes) of the matched type. like, the whole family tree gets pulled in. Default value: N
  • -obsolete boolean — so the default behaviour is to not use or return obsolete terms. they're retired, they're on read, we don't call them. but if you set this option, it will include all terms. all of them. even the dusty ones. Default value: N

⭐ Output section

  • -edamisid outobo — this is where the output goes. your .obo file, your moment, your legacy. 💫

💀 BUGS 💀

found a bug? 😭 no worries, it happens to the best of us. report it to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or go straight to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). they'd lowkey love to hear from you. 🫶

👀 SEE ALSO 👀

edamisid is fully documented via the tfm(1) system. yes, tfm(1). go look, bestie, it's all there. 🌸

💜 AUTHOR 💜

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • wrote the script used to autogenerate this manual page. slay. 💅

this manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. it can be redistributed under the same terms as EMBOSS itself. fr fr. 📜

and that's the whole page, no skips, no shortcuts, every flag accounted for 💖

this has been EMBOSS 6.4.0, dated 05/11/2012, page EDAMISID(1e) — mwah, take care of her 🎀

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