EDAMISFORMAT(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ EDAMISFORMAT(1e) ✨

okay so bestie, this is a page from the EMBOSS Manual for Debian, and we're about to get into edamisformat together. buckle up 💖

🌸 NAME 🌸

edamisformat — find EDAM ontology terms by is_format_of relation. yes queen, it's giving ontology-matchmaker energy 🔍💅

🎀 SYNOPSIS 🎀

edamisformat -identifier string [-namespace list] -sensitive boolean
             -subclasses boolean -obsolete boolean -edamisformat outobo

edamisformat -help

so you literally just run it like that, no cap ✨

🦋 DESCRIPTION 🦋

edamisformat is a command line program from EMBOSS (aka “the European Molecular Biology Open Software Suite”). it's part of the "Ontology:EDAM,Data retrieval:Ontology data" command group(s). so yeah, it lives in the ontology corner of the EMBOSS house and it's thriving there 🏡✨

👑 OPTIONS 👑

🍓 Input section

  • -identifier string — this is the input, you hand it a string and off we go 💌

🌈 Additional section

  • -namespace list — by default, all terms are returned. but if you're feeling picky, searches can be limited to one or a few namespaces. Default value: * (i.e. everything, the whole buffet 🍽️)

💜 Advanced section

  • -sensitive boolean — by default, the query keywords are matched against the EDAM term names (and synonyms) only. this option also matches the keywords against the EDAM term definitions, and will therefore (typically) report more matches. Default value: N
  • -subclasses boolean — extend the query matches to include all terms which are specialisations (EDAM sub-classes) of the matched type. Default value: N (go off, collect the whole family tree 🌳)
  • -obsolete boolean — the default behaviour is to not use or return obsolete terms. this option, if set, will include all terms. Default value: N

🧚 Output section

  • -edamisformat outobo — the output, it goes to outobo 🫶

💀 BUGS 💀

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

not me telling you where to file bugs like it's a group chat invite 😭 but fr fr, if something's broken, tell the devs.

⭐ SEE ALSO ⭐

edamisformat is fully documented via the tfm(1) system. iykyk 📖✨

🌸 AUTHOR 🌸

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. iconic behaviour honestly 👑

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. slay, permissive licensing periodt 🎀

and that's the whole page bestie!! this one's from EMBOSS 6.4.0, dated 05/11/2012 — vintage but still serving 💅✨ go format some ontology terms, you've got this 🫶

📦 where this page comes from