EDAMHASOUTPUT(1e)

✨ EDAMHASOUTPUT ✨

okay bestie, welcome to the manual for edamhasoutput 💅 it lives in the 1e manual section and it's literally your girl for finding EDAM ontology terms by the has_output relation 🦋 (that's the (1e) vibe — EMBOSS, general commands, iykyk).

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🌸 NAME 🌸

edamhasoutput — Find EDAM ontology terms by has_output relation

like. that's the whole job. find terms. via has_output. slay 💖

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⭐ SYNOPSIS ⭐

edamhasoutput -identifier string [-namespace list] -sensitive boolean
              -subclasses boolean -obsolete boolean
              -edamhasoutput outobo

edamhasoutput -help

so you can just run the -help version if you're feeling lazy 🫶 (no judgement, that's valid). otherwise it's the full flag parade above ✨

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💜 DESCRIPTION 💜

edamhasoutput is a command line program from EMBOSS — that's the “the European Molecular Biology Open Software Suite”, bestie, not just some random acronym, they really said open source biology and ate 👑

it's part of the "Ontology:EDAM,Data retrieval:Ontology data" command group(s). so if you're in your ontology-data-retrieval era, this is your girl 🌈

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🎀 OPTIONS 🎀

🍓 Input section

• -identifier string — the identifier you're throwing at it, fr fr 💫

🧚 Additional section

• -namespace list — okay so by default all terms come back, no filter, the whole buffet 🍽️ but you can limit the search to one namespace, or a few of them, if you want to be picky. Default value: * ⭐

🔥 Advanced section

• -sensitive boolean — so the default behaviour is that your query keywords only get matched against the EDAM term names (and the synonyms, periodt). turn this on and it also matches your keywords against the EDAM term definitions, which will therefore (typically) report more matches — more matches, more chaos, more fun 💀 Default value: N
• -subclasses boolean — this one extends your query matches to include all the terms that are specialisations (EDAM sub-classes) of the matched type. like, the whole extended family shows up 🫂 Default value: N
• -obsolete boolean — default behaviour is to not use or return obsolete terms 🚫 set this option and it will include all terms instead. Default value: N

ngl, -obsolete is lowkey the risky one — flipping it means the dusty deprecated terms get to come to the party too. iconic but chaotic 🙈

👑 Output section

• -edamhasoutput outobo — the output, in outobo form 💖

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😭 BUGS 😭

if you find a bug (not me manifesting that for you, but like, hypothetically 💅), report it to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or slide directly into the EMBOSS developers' DMs — fine, it's a tracker — at http://sourceforge.net/tracker/?group_id=93650&atid=605031. they wanna hear from you fr fr 🫶

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🦋 SEE ALSO 🦋

edamhasoutput is fully documented via the tfm(1) system. so if you need the full full lore, that's where it's at ✨

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🌸 AUTHOR 🌸

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

• Wrote the script used to autogenerate this manual page. (the autogen girlies ate 💅)

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💖 COPYRIGHT 💖

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. so like, same terms, no cap 👑

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and that's the whole page bestie!! 💜 this was EMBOSS 6.4.0, dated 05/11/2012 — yes it's giving vintage but it's still main character energy, and it's filed under EDAMHASOUTPUT(1e) in the EMBOSS Manual for Debian. go find those terms, you got this 🎀✨🦋