DBXOBO(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 DBXOBO(1e) — like, the manual, but make it make sense 💖

okay bestie, quick vibe check: this is dbxobo, a page from the EMBOSS Manual for Debian. Yes it's a real manpage. Yes it's a little dry. We're fixing that. 🫶

✨ NAME ✨

dbxobo — index an obo ontology using b+tree indices 🦋

✨ SYNOPSIS ✨

dbxobo -dbname string -standardname string -dbresource string
       -directory directory -filenames string -fields list
       -compressed boolean -release string -date string -exclude string
       -indexoutdir outdir -outfile outfile

dbxobo -help

✨ DESCRIPTION ✨

So dbxobo is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). She's not a lone wolf either — she's part of the "Utils:Database indexing" command group(s). iykyk. 👑

✨ OPTIONS ✨

🌸 Input section 🌸

  • -dbname string — the database name, you gotta hand it over, no default, it's just string. 💅
  • -standardname string — default value: $(dbname). she just copies whatever you put in -dbname unless you say otherwise, queen of efficiency fr fr.
  • -dbresource string — default value: oboresource. that's the resource name it runs with unless you override it.
  • -directory directory — default value: . (aka right here, in this directory, bestie).
  • -filenames string — default value: *.obo. she's grabbing every obo file she can see. iconic.

🎀 Required section 🎀

  • -fields list — default value: *. everything. the whole list. she wants it all, and honestly? same.
  • -compressed boolean — default value: Y. yes, compressed, that's the default, don't come for her.

🔥 Advanced section 🔥

  • -release string — default value: 0.0. placeholder release number energy.
  • -date string — default value: 00/00/00. yeah it's blank-ish, it's a default, it's fine. 🙈
  • -exclude string — nothing listed for a default here, it's just the exclude string, you decide.

💜 Output section 💜

  • -indexoutdir outdir — default value: . (again, right here, she's lowkey a homebody).
  • -outfile outfile — the output file. that's where the goodies land. ✨

💀 BUGS 💀

Found a bug? not me being the bearer of bad news 😭 you can report it to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or you can go straight to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). they wanna hear it, fr fr.

🦋 SEE ALSO 🦋

dbxobo is fully documented via the tfm(1) system. that's the whole flex. go read it. 📖

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. slay, script. 💅

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. periodt.

okay that's the whole page bestie, you're officially certified in dbxobo 💖 this little beauty is EMBOSS 6.4.0, dated 05/11/2012, and she answers to the name DBXOBO(1e). go index something iconic. 🎀✨

📦 where this page comes from