DBXEDAM(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 DBXEDAM(1e) — the EMBOSS Manual for Debian, but make it a group chat 💖

okay so bestie, we're in the 1e manual section and this whole page is about a lil command called dbxedam. it's giving database indexing. it's giving ontology. let's go 🦋

✨ NAME ✨

dbxedam — Index the EDAM ontology using b+tree indices 💅

🌸 SYNOPSIS 🌸

dbxedam -dbname string -standardname string -dbresource string
        -directory directory -filenames string -fields list
        -compressed boolean -release string -date string -exclude string
        -indexoutdir outdir -outfile outfile

dbxedam -help

that's the whole vibe right there. every flag. every string. no notes. 🎀

💜 DESCRIPTION 💜

so dbxedam is a command line program from EMBOSS — and yes bestie, EMBOSS stands for “the European Molecular Biology Open Software Suite” 🌈 — and it lives in the command group(s) "Utils:Database indexing". it indexes the EDAM ontology. with b+tree indices. that's it, that's the whole job. iconic behavior honestly 👑

🎀 OPTIONS 🎀

💖 Input section 💖

  • -dbname string — the database name. default value: edam ✨
  • -standardname string — the standard name. default value: $(dbname) 🦋
  • -dbresource string — the database resource. default value: edamresource 🍓
  • -directory directory — the directory. default value: . 🌸
  • -filenames string — the filenames. default value: EDAM*.obo 💫

🔥 Required section 🔥

  • -fields list — the fields. default value: * ⭐
  • -compressed boolean — whether it's compressed. default value: Y 💅

🌈 Advanced section 🌈

  • -release string — the release. default value: 0.0 ✨
  • -date string — the date. default value: 00/00/00 🎀
  • -exclude string — what to exclude. (no default here, bestie, you're on your own and that's okay 🫶)

👑 Output section 👑

  • -indexoutdir outdir — the index output directory. default value: . 💖
  • -outfile outfile — the output file. 🌟

😭 BUGS 😭

found a bug? not me. but fr fr, bugs can be reported to the Debian Bug Tracking system at http://bugs.debian.org/emboss, or you can go straight to the EMBOSS developers at http://sourceforge.net/tracker/?group_id=93650&atid=605031. go tell them. they wanna know. periodt 💀

🦋 SEE ALSO 🦋

dbxedam is fully documented via the tfm(1) system. so if you need more, that's where the lore lives 👑

💜 AUTHOR 💜

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. 🫶

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. 🌈

and that's the whole page, bestie!! this was EMBOSS 6.4.0, dated 05/11/2012, from the DBXEDAM(1e) manual 💅✨ stay indexed, stay slay 🎀🦋💖

📦 where this page comes from