CUTSEQ(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 CUTSEQ(1e) — the EMBOSS Manual for Debian, but make it a group chat 💖

okay bestie, gather round, because today we're learning about cutseq from the EMBOSS Manual for Debian and honestly? it's giving ✂️✨

✨ NAME ✨

cutseq — Removes a section from a sequence

like. it cuts. it's in the name. we love a self-aware icon 💅

🌸 SYNOPSIS 🌸

cutseq -sequence sequence -from integer -to integer -outseq seqout

cutseq -help

that's it. that's the whole vibe. four flags and a dream 🫶

🦋 DESCRIPTION 🦋

so cutseq is a command line program from EMBOSS (aka “the European Molecular Biology Open Software Suite”, say that five times fast, I dare you 😭).

it's part of the "Edit" command group(s). lowkey a whole little squad and cutseq is out here doing the deleting. main character energy fr fr 🔥

💖 OPTIONS 💖

🌈 Input section

  • -sequence sequence — hand it a sequence. that's the one we're operating on, bestie 🧚

👑 Required section

  • -from integer — This is the start position (inclusive) of the section of the sequence that you wish to remove. Default value: $(sequence.begin)
inclusive!! so that position is coming OUT. no cap. 💀
  • -to integer — This is the end position (inclusive) of the section of the sequence that you wish to remove. Default value: $(sequence.end)
also inclusive. so the range from -from to -to gets yeeted, both ends included. periodt ✨

🎀 Output section

  • -outseq seqout — where the surviving sequence goes to live its best life 🌸

😭 BUGS 😭

found a bug? not me being the one to tell you, but okay — Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

go off, report it, make it iconic 🙈

⭐ SEE ALSO ⭐

cutseq is fully documented via the tfm(1) system.

that's the plug. go read it. iykyk 📚

💜 AUTHOR 💜

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page.

and honestly? respect the automation. ate and left no crumbs 👑

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

basically: same rules as EMBOSS, so behave accordingly 🎀

and that's the whole page, bestie!! this gem was brought to you by EMBOSS 6.4.0, dated 05/11/2012, and it will forever live on as CUTSEQ(1e) in the EMBOSS Manual for Debian. slay, stay hydrated, and always double-check your inclusive ranges 💖✨🦋🌸💅

📦 where this page comes from