CPGREPORT(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 CPGREPORT(1e) — the EMBOSS Manual for Debian, but make it make sense 💖

okay bestie, sit down, hydrate, and let me tell you about cpgreport from the EMBOSS Manual for Debian. it's giving bioinformatics but cute. 🧬✨

🌸 NAME 🌸

cpgreport — Identify and report CpG-rich regions in nucleotide sequence(s)

✨ SYNOPSIS ✨

cpgreport -sequence seqall -score integer -outfile outfile
          -outfeat featout

cpgreport -help

🦋 DESCRIPTION 🦋

so cpgreport is a command line program from EMBOSS (aka “the European Molecular Biology Open Software Suite” — iconic name, no notes 💅). it lives in the "Nucleic:CpG Islands" command group(s). that's its whole squad, its whole clique, its whole vibe. 🫶

👑 OPTIONS 👑

🌈 Input section

  • -sequence seqall — yeah this is your input sequence situation. required, obviously, main character energy.

💜 Required section

  • -score integer — this sets the score for each CG sequence found. a value of 17 is more sensitive, but 28 has also been used with some success. Default value: 17

🎀 Output section

  • -outfile outfile — the output file. your results go here, slay.
  • -outfeat featout — File for output features

💀 BUGS 💀

found a bug? not me being the bearer of bad news but fr fr, bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031). they wanna hear from you, bestie. 🐛

🔥 SEE ALSO 🔥

cpgreport is fully documented via the tfm(1) system. iykyk. go read it. 📖

🫶 AUTHOR 🫶

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. yes, a script wrote this. we're all just living in its world. 😭

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. periodt. 💅

lowkey important: this page came out of EMBOSS 6.4.0, dated 05/11/2012, and the whole thing is filed under CPGREPORT(1e). so there you go bestie, go find those CpG-rich regions and eat. 🍓🧚💖
📦 where this page comes from