CODERET(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 CODERET(1e) — the EMBOSS Manual for Debian, but make it cute 💖

okay so bestie, sit down, hydrate, and let me tell you about coderet — she's a whole vibe and she's here to help 💅

✨ NAME ✨

coderet — Extract CDS, mRNA and translations from feature tables 🧬🦋

like. she pulls the good stuff out of your feature tables. that's the job. that's the whole job. and she does it flawlessly ✨

🌸 SYNOPSIS 🌸

coderet -seqall seqall -outfile outfile -cdsoutseq seqoutall
        -mrnaoutseq seqoutall -translationoutseq seqoutall
        -restoutseq seqoutall

coderet -help

look at her go. five outputs. one girl. no notes. 👑

💫 DESCRIPTION 💫

So. coderet is a command line program from EMBOSS — that's “the European Molecular Biology Open Software Suite” 🎀 — and she's part of the "Nucleic:Translation,Data retrieval:Sequence data" command group(s).

iykyk 💅

🎀 OPTIONS 🎀

💜 Input section

  • -seqall seqall — your input sequences go here, bestie 🫶

🌈 Output section

  • -outfile outfile — where the main output lands ✨
  • -cdsoutseq seqoutall — the CDS sequences get written out here 🧬
  • -mrnaoutseq seqoutall — the mRNA sequences go here 💌
  • -translationoutseq seqoutall — the translations, right this way ⭐
  • -restoutseq seqoutall — everything else (the rest) lives here 🌊

🙈 BUGS 🙈

found a bug? not her fault but like, please tell someone 💀 Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

fr fr though — report the bugs. they can't fix what they can't see 🫶

🦋 SEE ALSO 🦋

coderet is fully documented via the tfm(1) system. go read it, it's giving thorough ✨

👑 AUTHOR 👑

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. 🤖💖

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. legal but make it cute, periodt 💅

and that's the whole page bestie, no cap, every single detail intact 🎀 This one's from EMBOSS 6.4.0, dated 05/11/2012 — iconic, timeless, ate. 💖✨🦋

📦 where this page comes from