CATHPARSE(1e)

📦 version 0.1.660, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ CATHPARSE(1e) ✨

okay so bestie, we're in the EMBOSS Manual for Debian, and today's main character is cathparse 💅

🌸 NAME 🌸

cathparse — generates a DCF file from raw CATH files. that's it, that's the whole job, and she does it flawlessly 🫶

✨ SYNOPSIS ✨

          -outfile outfile -logfile outfile

💖 DESCRIPTION 💖

cathparse is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). no cap, that's the actual acronym.

She's part of the "Utils:Database creation" command group(s), which is giving very much backstage-crew-but-make-it-iconic energy 🎀

👑 OPTIONS 👑

🍓 Input section

  • -listfile infile — this one specifies the name of the raw CATH classification file (caths.list.vX.X) (input). the raw CATH parsable files (classification and description files) are available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: caths.list.v2.4 🌈
  • -domfile infile — specifies the name of the raw CATH classification file (domlist.vX.X) (input). same deal, the raw CATH parsable files (classification and description files) live at ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: domlist.v2.4 ✨
  • -namesfile infile — specifies the name of the raw CATH classification file (CAT.names.all.vX.X) (input). and yes, the raw CATH parsable files (classification and description files) are available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value: CAT.names.all.v2.4 🦋

💜 Output section

  • -outfile outfile — specifies the name of the CATH DCF file (domain classification file) (output). so like, a 'domain classification file' contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). these files get generated by using SCOPPARSE and CATHPARSE. and domain sequence information can be added to the file by using DOMAINSEQS. Default value: Ecath.dat 💖
  • -logfile outfile — specifies the name of the CATHPARSE log file. Default value: cathparse.log 📝

😭 BUGS 😭

found a bug? not the vibe, but okay, report it to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or slide directly into the EMBOSS developers' DMs at (http://sourceforge.net/tracker/?group_id=93650&atid=605031) 🐛

🦋 SEE ALSO 🦋

cathparse is fully documented via the tfm(1) system. go read it, iykyk 👑

💅 AUTHOR 💅

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • wrote the script used to autogenerate this manual page. slay, honestly ✨

this manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. it can be redistributed under the same terms as EMBOSS itself. periodt 💖

cute lil sign-off bestie: this page came from DOMAINATRIX 0.1.0+20100721, dated 08/11/2010, and yeah she's still CATHPARSE(1e) at heart 🎀🫶
📦 where this page comes from