CAI(1e)

💖 CAI(1e) — the cute lil' codon adaptation index page 💖

okay so bestie, we're in the EMBOSS Manual for Debian section here, and this whole thing is literally about cai 💅

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✨ NAME ✨

cai — calculate codon adaptation index 🌸

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🦋 SYNOPSIS 🦋

cai -seqall seqall -cfile codon -outfile outfile

cai -help

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👑 DESCRIPTION 👑

cai is a command line program from EMBOSS — that's "the European Molecular Biology Open Software Suite", the iconic bioinformatics toolbox 🧚

It's part of the "Nucleic:Codon usage" command group(s). periodt.

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🎀 OPTIONS 🎀

💜 Input section

• -seqall seqall — your sequence input, bestie. pass it a seqall. 🫶
• -cfile codon — the codon file, fr fr. Default value: Eyeast_cai.cut ⭐

🌈 Output section

• -outfile outfile — where the results go. give it an outfile 💖

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😭 BUGS 😭

Found a bug? not me being the bearer of bad news, but here's where to report it:

• The Debian Bug Tracking system: http://bugs.debian.org/emboss
• Or directly to the EMBOSS developers: http://sourceforge.net/tracker/?group_id=93650&atid=605031

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💀 SEE ALSO 💀

cai is fully documented via the tfm(1) system. iykyk 👑

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🌸 AUTHOR 🌸

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

• Wrote the script used to autogenerate this manual page. iconic, honestly.

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🍓 COPYRIGHT 🍓

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. no cap 💅

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and that's the whole vibe check, bestie ✨ this was EMBOSS 6.4.0, dated 05/11/2012, page CAI(1e) — slay, bye 🎀🦋💖