ALIGNCOPYPAIR(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 NAME 💖

okay bestie, aligncopypair — it reads and writes pairs from alignments. that's it, that's the whole vibe. ✨

this one lives in the EMBOSS Manual for Debian, so like, that's the manual set we're in. 🎀

🌸 SYNOPSIS 🌸

aligncopypair -sequences seqset [-name string] [-comment string]
              [-append boolean] -outfile align

aligncopypair -help

🦋 DESCRIPTION 🦋

so aligncopypair is a command line program from EMBOSS ("the European Molecular Biology Open Software Suite"). no cap, that's the official name, it's a whole acronym situation. 💅

it's part of the "Edit" command group(s). so if you're scrolling through the Edit girlies, this is one of them. 👑

✨ OPTIONS ✨

🍓 Input section

  • -sequences seqset — the file containing a sequence alignment. this is your input bestie, feed it the alignment. 💖

💜 Required section

(yeah it's empty, the section's just sitting there being mysterious, we don't make the rules 🫶)

🌈 Additional section

  • -name string — a name. you give it a string. ✨
  • -comment string — a comment. also a string. 🎀
  • -append boolean — this one lets you append the name and comments you have given on to the end of the existing alignment header. default value: N. so if you don't say anything, it's a no, periodt. 🙈

🧚 Advanced section

(also empty, it's giving minimal, we respect it 💅)

👑 Output section

  • -outfile align — where the alignment goes on its way out. your output file, bestie. 🌟

💀 BUGS 💀

found a bug? 😭 not the vibe but okay, report it to the Debian Bug Tracking system:

http://bugs.debian.org/emboss

or you can go straight to the EMBOSS developers:

http://sourceforge.net/tracker/?group_id=93650&atid=605031

they wanna hear about it fr fr. 🫶

🌟 SEE ALSO 🌟

aligncopypair is fully documented via the tfm(1) system. so if you want the deep lore, that's where it lives. iykyk. 📚✨

🎀 AUTHOR 🎀

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

  • Wrote the script used to autogenerate this manual page. iconic behaviour honestly. 👑

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. so like, share it, just keep the same terms, no funny business. 💅

and that's the whole page bestie!! 🌈✨ this one's from EMBOSS 6.4.0, dated 05/11/2012, and it's the ALIGNCOPYPAIR(1e) page — go read your alignments, mwah 💋🦋🌸

📦 where this page comes from