AJTEST(1e)

📦 version 6.6.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 AJTEST — bestie edition 💖

ok so real talk, this is ajtest, and it lives in section 1e of the manual. it's literally the test file for ACD parsing. yes, a test file got its own man page. main character behaviour tbh 👑

✨ NAME ✨

ajtest — Test file for ACD parsing 🧪

🎀 SYNOPSIS 🎀

ajtest -sequence seqall -bsequence seqset -idresource string
       -taxdir directory -outfile outfile -outseq seqout
       -outfeat featout -outdir outdir

ajtest -help

like. that's the whole vibe. eight options and a -help. slay.

🦋 DESCRIPTION 🦋

ok so ajtest is a command line program from EMBOSS — and if you don't know, that's "the European Molecular Biology Open Software Suite". it's giving very official, very European, very molecular 💅

it's part of the "Test" command group(s). yes bestie, that's genuinely the group name. no notes.

🌸 OPTIONS 🌸

💜 Input section

  • -sequence seqall — you hand it a seqall. that's the input sequence situation 🧬
  • -bsequence seqset — a seqset for the -bsequence slot. yes it starts with a b. we don't ask questions, we just pass the value.
  • -idresource string — takes a string for -idresource. a resource for ids, if you will ✨
  • -taxdir directory — a directory for -taxdir. taxonomy directory vibes 🗂️

🍓 Output section

  • -outfile outfile — writes to an outfile 📄
  • -outseq seqout — writes a seqout 🧬✨
  • -outfeat featout — writes a featout 🎀
  • -outdir outdir — the output directory.
    • Default value: /tmp
lowkey important: that default is /tmp, bestie. know it, love it, remember it.

😭 BUGS 😭

found a bug? not me gatekeeping the reporting channels, here's where to send it:

go off, report it, make it everyone's problem 🫶

🔥 SEE ALSO 🔥

ajtest is fully documented via the tfm(1) system. so if you want the full lore, that's where it lives. iykyk 📚

👑 AUTHOR 👑

  • Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
    • Wrote the script used to autogenerate this manual page. iconic honestly 🛠️✨

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself. periodt.

that's the whole thing bestie, you ate 💅🌸

EMBOSS 6.4.0 · 05/11/2012 · AJTEST(1e) — mwah, go read tfm(1) if you want more 💖🦋🎀

📦 where this page comes from